CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_CORDI (Superoxide dismutase [Mn] OS=Corynebacterium diphtheriae GN=sodA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.027e-13
Identity = 53/207 (25.60%), Postives = 85/207 (41.06%), Query Frame = 1
Query:  139 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            Y  +ALEPH++ + +E H  KHH  YV+  N  +   +          V+ + +K DL  AFN      NH  FW                  I ++FGS                GSGWA L Y                      L++ +  +    +  + + LL +D+WEHA+YL ++N + DY+    + + +W+ V+ R E
Sbjct:   10 YAYDALEPHIAAEIMELHHSKHHANYVNGANAALEKLQKARENGEIGAVVTALSK-DL--AFNLGGHT-NHSIFWKNLSPNGGGEPTGALAEAIAKEFGSFEKFKDHFSAAALGLQGSGWAVLGYDHIGG----------------RLVIEQLTDQQGNISANLTPLLMLDMWEHAFYLQYKNVKADYVKAVWN-VFNWDDVAARFE 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_CHAFE (Superoxide dismutase [Mn], mitochondrial OS=Charybdis feriatus PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.027e-13
Identity = 61/196 (31.12%), Postives = 76/196 (38.78%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRR 693
            K  L   PY   ALEP +S + ++ H  KHH+ YV+NLN  +   +L + K   DV         L PA   N     NH  FW                  I RDFGS                GSGW WL Y                   + +L +   PN  +PL        L  IDVWEHAYYL ++N R
Sbjct:   21 KHTLPDLPYDYGALEPTISAEIMQLHHSKHHQTYVNNLN--VAEEKLAEAKEKGDVSTII----SLAPALRFNGGGHINHSIFW-QNLSADGGEPEGELLAAINRDFGSVENMKNQLSAQTVAVQGSGWGWLGY-----------------IAEGALQIATCPNQ-DPLEATTGLVPLFGIDVWEHAYYLQYKNVR 191          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_ASPOR (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus oryzae GN=sodB PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.027e-13
Identity = 58/228 (25.44%), Postives = 85/228 (37.28%), Query Frame = 1
Query:  106 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLP-----AFNNAAQAWNHDFFW-----XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            ++  F L P PY  +ALEP + K  +E H  KHH+ Y+ NLN  +         S +   +A+ N   L+       FN      NH  FW                       IE  +GS                GSGW WLV               + S KD+  +  K P            +  +D+WEHAYYL + N +  Y+     K+++W +   R +
Sbjct:    1 MATTFSLPPLPYAYDALEPVICKQIMEIHHQKHHQTYITNLNAAL---------SAQSTALAANNIPQLINLQQKIKFNGGGHI-NHSLFWKNLAPHASPETNIDQAAPVLKAAIEAQYGSVEKFKEAFGATLLGLQGSGWGWLV------ANGPGGKLEIVSTKDQDPVTDKVP------------VFGVDMWEHAYYLQYFNNKASYVEGIW-KVLNWRTAEDRFK 199          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_ASPFU (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus fumigatus GN=sodB PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 59/225 (26.22%), Postives = 90/225 (40.00%), Query Frame = 1
Query:  106 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLN----KQIVGTELGDGKSLEDVVIA-SYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL----IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            +S ++ L P PYP +AL+P++S+  +E H  KHH+ YV+ LN     Q    E  D   L  V  A  +N G  +          NH  FW                 +    IE+ +GS                GSGW WLV                 ++  K  L + T +  +P V   + +  +D+WEHAYYL + N +  Y     + +++W     R
Sbjct:    1 MSQQYTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEANDVPKLVSVQQAIKFNGGGHI----------NHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNTTLLGIQGSGWGWLV-----------------TDGPKGKLDITTTHDQDP-VTGAAPVFGVDMWEHAYYLQYLNDKASYAKGIWN-VINWAEAENR 196          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODB_ASPNG (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus niger GN=sodB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.984e-12
Identity = 57/221 (25.79%), Postives = 82/221 (37.10%), Query Frame = 1
Query:  106 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW-----XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            +++K  L   PY  +ALEP +SK  +E H  KHH+ YV+NLN  +         +L+   I           FN      NH  FW                       IE+ +GS                GSGW WLV                 S      L + T    +P+      +  +D+WEHAYYL + N +  Y+     K+++WE    R
Sbjct:    1 MTSKCTLPDLPYDYDALEPIISKQIMELHHKKHHQTYVNNLNAALA----SQASALDSNDITQLISIQQKLKFNGGGHI-NHSLFWKNLARYDSPATNLERSAPSLKDAIEKQWGSVKNFTDAFEAVLLGIQGSGWGWLV-----------------SSGKTGFLEIVTTKDQDPVTGPI-PVFGVDMWEHAYYLQYLNNKASYVQNIW-KVINWEEAEHR 197          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_MYCTU (Superoxide dismutase [Fe] OS=Mycobacterium tuberculosis GN=sodB PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11
Identity = 57/214 (26.64%), Postives = 83/214 (38.79%), Query Frame = 1
Query:  112 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            A++ L    +   ALEPH+S    E H  KHH  YV   N  +   +L + ++ ED      N+ +L  AFN A    NH  +W                  I   FGS             T  GSGWA L +                      LL+ +  +           LL +D+WEHA+YL ++N + D+   F + +V+W  V  R
Sbjct:    2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAV--AKLEEARAKEDHSAILLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGW----------------DTLGNKLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWN-VVNWADVQSR 193          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_MYCBO (Superoxide dismutase [Fe] OS=Mycobacterium bovis GN=sodB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11
Identity = 57/214 (26.64%), Postives = 83/214 (38.79%), Query Frame = 1
Query:  112 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            A++ L    +   ALEPH+S    E H  KHH  YV   N  +   +L + ++ ED      N+ +L  AFN A    NH  +W                  I   FGS             T  GSGWA L +                      LL+ +  +           LL +D+WEHA+YL ++N + D+   F + +V+W  V  R
Sbjct:    2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAV--AKLEEARAKEDHSAILLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGW----------------DTLGNKLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWN-VVNWADVQSR 193          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_DEBHA (Probable superoxide dismutase [Mn], mitochondrial OS=Debaryomyces hansenii GN=DEHA2E01232g PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.582e-11
Identity = 62/224 (27.68%), Postives = 92/224 (41.07%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-----IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPN---AVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLET 762
            K EL    +  ++LEP++S    E H  KHH+ YV+  N  I   +L + +S  DV  A   + ++   F+      NH  FW                       I   +GS             +  GSGWA++V                  +   +L VV T N     +PLV     L+ ID WEHAYYL +QN + DY     + +++WE  SKR ++
Sbjct:   11 KIELPQLDWAYDSLEPYISGKINEIHHKKHHQTYVNGYNSAI--EQLIEAESQGDVKKAIVIQQNI--KFHGGGHT-NHVLFWKSLAPNSQNGGKHPGSDTNLGKKIIEQYGSIDNLISITNAKLASIQGSGWAFIVKN---------------KQNGGNLDVVTTYNQDTVTDPLV----PLIAIDAWEHAYYLQYQNVKADYFKAIWN-VINWEEASKRFDS 209          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_YEAST (Superoxide dismutase [Mn], mitochondrial OS=Saccharomyces cerevisiae GN=SOD2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.513e-11
Identity = 61/228 (26.75%), Postives = 88/228 (38.60%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVI---ASYNKGDLLPAFNN----AAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPN---AVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            K  L    +   ALEP++S    E H+ KHH+ YV+  N     T +   + L D++    +  N   ++    N         NH  FW                 L   I+  FGS                GSGWA++V                       L VV+T N      PLV     L+ ID WEHAYYL +QN++ DY     + +V+W+  S+R +
Sbjct:   27 KVTLPDLKWDFGALEPYISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMIAIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSGWAFIVKNL---------------SNGGKLDVVQTYNQDTVTGPLV----PLVAIDAWEHAYYLQYQNKKADYFKAIWN-VVNWKEASRRFD 229          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_CANAL (Superoxide dismutase [Mn], mitochondrial OS=Candida albicans GN=SOD2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 57/222 (25.68%), Postives = 83/222 (37.39%), Query Frame = 1
Query:  112 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFN-NAAQAWNHDFFW-----XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            +K+ L    Y  +A EP++S    E H+ KHH+ YV+NLN  I        K     ++A      L  A N N     NH  +W                       I + FGS                GSGWA++V                      ++ V+ T N       +   L+ ID WEHAYYL +QN + DY       +++W+   +R E
Sbjct:   34 SKYSLPELDYEFSATEPYISGQINEIHYTKHHQTYVNNLNASIEQAVEAKSKGEVKKLVA------LEKAINFNGGGYLNHCLWWKNLAPVSQGGGQPPSEDSKLGKQIVKQFGSLDKLIEITNGKLAGIQGSGWAFIVKN---------------KANGDTIDVITTANQDTVTDPNLVPLIAIDAWEHAYYLQYQNVKADYFKNLW-HVINWKEAERRFE 233          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODM_CORDI8.027e-1325.60Superoxide dismutase [Mn] OS=Corynebacterium dipht... [more]
SODM_CHAFE8.027e-1331.12Superoxide dismutase [Mn], mitochondrial OS=Charyb... [more]
SODM_ASPOR8.027e-1325.44Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_ASPFU2.336e-1226.22Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODB_ASPNG3.984e-1225.79Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODF_MYCTU1.514e-1126.64Superoxide dismutase [Fe] OS=Mycobacterium tubercu... [more]
SODF_MYCBO1.514e-1126.64Superoxide dismutase [Fe] OS=Mycobacterium bovis G... [more]
SODM_DEBHA2.582e-1127.68Probable superoxide dismutase [Mn], mitochondrial ... [more]
SODM_YEAST7.513e-1126.75Superoxide dismutase [Mn], mitochondrial OS=Saccha... [more]
SODM_CANAL9.813e-1125.68Superoxide dismutase [Mn], mitochondrial OS=Candid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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