CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.151e-35
Identity = 85/214 (39.72%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWD-YSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 756
            FEL   P+ +NALEPH+S++TLE+H+GKHH  YV  LN  + GTEL + KSLE+++  S         FNNAAQ WNH F+W                  IE+ FGS               FGS W WLV                    + SL +V T NA  P+  +  + LLT+D+WEHAYY+D++N RP Y+  F   LV+W+ VSK L
Sbjct:    2 FELPALPFAMNALEPHISQETLEYHYGKHHNTYVVKLNGLVEGTELAE-KSLEEIIKTSTG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGEVAAAIEKAFGSFAEFKAKFTDSAINNFGSSWTWLV-----------------KNANGSLAIVNTSNAGCPITEEGVTPLLTVDLWEHAYYIDYRNLRPSYMDGFW-ALVNWDFVSKNL 191          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.964e-35
Identity = 88/214 (41.12%), Postives = 110/214 (51.40%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            FEL P PY  +AL+PH+SK+TLEFH  KHH  YV NLN  + GTE  +GK+LE++V  S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K                  D SL +  T  A  PL    + LLT DVWEHAYY+D++N RP Y+  F + LV+W  V+++ E
Sbjct:    3 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKTS--SGGI---FNNAAQVWNHTFYWNCLAPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK-----------------ADGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWAFVAEQFE 192          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 3.349e-35
Identity = 87/214 (40.65%), Postives = 111/214 (51.87%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            FEL P PY  +AL+PH+SK+TLE+H  KHH  YV NLN  + GTE  +GK+LE++V +S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K                  D SL +  T  A  PL    + LLT DVWEHAYY+D++N RP Y+  F + LV+W  V+++ E
Sbjct:    3 FELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK-----------------ADGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWAFVAEQFE 192          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.374e-35
Identity = 86/209 (41.15%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  124 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            L P PY L+AL P +SK+TLEFH+GKHH+ YV NLN  I GTE  +  SLE++V  S         FNNAAQ WNH F+W                  I+  +GS               FGSGW WLV K                  D +L +V T NA  PL     +LLT DVWEHAYY+D++N RP Y+  F   LV+WE  +K
Sbjct:    5 LPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPGTEF-ENLSLEEIVKKSSG-----GVFNNAAQVWNHTFYWNSLSPNGGGEPSGALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKK-----------------ADGTLDIVNTSNAATPLTTADKALLTCDVWEHAYYIDYRNARPKYLENFW-ALVNWEFAAK 189          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.835e-34
Identity = 85/208 (40.87%), Postives = 106/208 (50.96%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWD-YSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 738
            FEL   PY ++ALEPH+SK+TLEFH GKHH  YV  LN  I GT+  + KSLE++V +S         FNNAAQ WNH F+W                  I   +GS               FGS W WLV                    D SL +V T NA  PL  D  + +LT+D+WEHAYY+D++N RPDY+  F   LV+WE
Sbjct:    2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKF-ENKSLEEIVCSSDG-----GVFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLV-----------------KLADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKGFW-SLVNWE 185          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.703e-34
Identity = 76/218 (34.86%), Postives = 106/218 (48.62%), Query Frame = 1
Query:  103 QISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 756
            Q S  F L   PY   + +PH +++T ++H GKHH +YV NLN  I   E    K LE+++  S    ++    NNA+Q WNH FFW                  I +DFGS              QFGSGW W+VY                   D  L ++KT NA  P+V     +L  DVWEHAYY+D++N+R DYI +F+  +++W+ V   L
Sbjct:    9 QPSYPFILPDLPYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDREELQKKDLEEIIEWSSQNAEVA-ILNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWVVYH------------------DNKLQIIKTSNAGTPIVNFMKPILACDVWEHAYYIDYRNKRSDYIDIFIRHMINWKFVEDNL 207          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.836e-34
Identity = 76/222 (34.23%), Postives = 107/222 (48.20%), Query Frame = 1
Query:   91 KTGGQISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 756
            +   Q S  F L   PY   + +PH + +T ++H GKHH +YV NLN  +   E    K LE ++  S +K   +  FNNA+Q WNH FFW                  I +DFGS              QFGSGW W+VY                   +  L ++KT NA  P+V     +L  DVWEHAYY+D++N+R DYI +F+  +++W+ V   L
Sbjct:    5 RKANQTSYPFILPDLPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDREELQKKDLEGIIKWS-SKNSEVTVFNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVVYN------------------NNKLQIIKTSNADTPIVNLMKPILVCDVWEHAYYIDYRNKRSDYIDIFISHMINWKFVEDNL 207          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.407e-33
Identity = 85/215 (39.53%), Postives = 108/215 (50.23%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            FEL   PY  +AL P+MS++TLE+H  KHH AYV N NK      L D  SLED+V  SY  G   P FNNA Q +NH  FW                   I+ D G               QFGSGWAWL                  S K+  L + KTPN  NPLV   + +L +DVWEH+YY+D++N RP Y+  F+D L++W+ V +  E
Sbjct:    3 FELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEEAGLSD-LSLEDIVKKSY--GTNQPLFNNAGQHYNHVHFWKWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFSAAGAGQFGSGWAWL------------------SVKNGKLEISKTPNGENPLVHGATPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYE 196          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.115e-30
Identity = 78/214 (36.45%), Postives = 101/214 (47.20%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            FEL   PYP NALEPH+ + T+  H GKHH  YV  LN  + G      KS+E +V  + +  +       NN     NH  FW                  I  +FGS              +FGSGWAWLV                    D  L +  TPN   PL+   + +L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V+KR
Sbjct:    3 FELPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALEGHSALAEKSIEALVSDLDAVPENIRTAVRNNGGGHANHTLFWQILSPNGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLVVN------------------DGKLEITSTPNQDTPLMEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVAKR 197          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.484e-30
Identity = 80/214 (37.38%), Postives = 110/214 (51.40%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHD-FFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 756
            +E+   PY  NALEP +S+ T+++H+GKH + YV+NLN  + GTE  +GK++E  ++AS   G +   FNNA Q  NH  +F                   I+RDFGS               FGSGWAWL                   +KD  L + K PN  NP+      LL  DVWEHAYYLD+QNRR D+++   + ++ W+ V KRL
Sbjct:    3 YEMPKLPYANNALEPVISQQTIDYHYGKHLQTYVNNLNSLVPGTEY-EGKTVE-AIVASAPDGAI---FNNAGQVLNHTLYFLQFAPKPAKNEPAGKLGEAIKRDFGSFENFKKEFNAASVGLFGSGWAWLSV-----------------DKDGKLHITKEPNGSNPVRAGLKPLLGFDVWEHAYYLDYQNRRADHVNKLWE-IIDWDVVEKRL 193          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODF_PHOLE1.151e-3539.72Superoxide dismutase [Fe] OS=Photobacterium leiogn... [more]
SODF_PSEPU1.964e-3541.12Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_PSEPK3.349e-3540.65Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_BORPE4.374e-3541.15Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODF_PSEHT2.835e-3440.87Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODF_RICPR3.703e-3434.86Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_RICTY4.836e-3434.23Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODF_RHIME1.407e-3339.53Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODM_BACHD1.115e-3036.45Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODF_BACFR2.484e-3037.38Superoxide dismutase [Fe] OS=Bacteroides fragilis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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