CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.044e-28
Identity = 76/213 (35.68%), Postives = 101/213 (47.42%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            FEL   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV                    +  L +V TPN  NPL    + +L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDE 193          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.044e-28
Identity = 80/221 (36.20%), Postives = 104/221 (47.06%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            FEL+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY                + K++ L  V T NA  P+  D   LL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYE 199          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.044e-28
Identity = 80/221 (36.20%), Postives = 104/221 (47.06%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            FEL+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY                + K++ L  V T NA  P+  D   LL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYE 199          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.363e-28
Identity = 78/214 (36.45%), Postives = 101/214 (47.20%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-----NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            PY  +ALEPH  K+T+  H  KHH  Y+ NLN  + G  EL D KS+E++V    N  ++  A      NN     NH FFW                  IE  FGS             T+FGSGWAWLV                    +  L V  TPN  +PL    + ++ +DVWEHAYYL++QNRRPDYI  F + +V W +  KR +
Sbjct:   25 PYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELAD-KSVEELVA---NLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVN------------------NGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWN-VVDWNAAEKRYQ 215          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 126.331 bits (316), Expect = 1.780e-28
Identity = 75/213 (35.21%), Postives = 101/213 (47.42%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            +EL   PY  +ALEPH+ K+T+  H  KHH  YV NLNK + G      KS+E++V  + S  +       NN     NH  FW                  I   FGS              +FGSGWAWLV                    +  L +  TPN  +PL    + +L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V++
Sbjct:    3 YELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVN------------------NGKLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVAR 196          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.325e-28
Identity = 83/227 (36.56%), Postives = 108/227 (47.58%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV-----IASYNKGDLLPAFNNAAQAWNHDFFW----XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + L   PY  +ALEPH+   T+E H  KHH+ YVDN NK + GTE  D   +E ++     + +  KG L    NNA    NH  FW                      I   FGS             T+FGSGWAWLV                   KD  L VV T N  NPL+ +       + +L +DVWEHAYYL++QNRRPDY++ F + +V+W+ VSKR
Sbjct:    3 YTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFAD-LPVEQLIQQLDRVPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVV------------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKR 206          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.325e-28
Identity = 78/211 (36.97%), Postives = 104/211 (49.29%), Query Frame = 1
Query:  121 ELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            EL   PY ++AL P +SK+T+EFH GKH + YVDNLNK I+GTE  +   L  +V  S  +G +   FNNA Q  NH+ ++                  I++ FGS             T FGSGW WL                  S+ +  L + K PNA NP+    + LL  DVWEHAYYL +QNRR D++      +V W+ V  R
Sbjct:    4 ELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEF-ENADLNTIVQKS--EGGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLA-----------------SDANGKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYYLTYQNRRADHLKDLW-SIVDWDIVESR 190          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.036e-28
Identity = 85/222 (38.29%), Postives = 107/222 (48.20%), Query Frame = 1
Query:  112 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDV--VIASYNKGDLLPAFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS-----LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            A+F+  P PY  NAL+P + + T+E H+GKHH+AYVDNLN QI      D   L  +   I+ YN        NN    +NH FFW                   I +DFGS              +FGSGWAWL+                P+ K   L V  TPN  NPL+ D S      LL +DVWEHAYYL +QNRR DYI  F   +V+W  V++R
Sbjct:   23 AEFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKTYPELDKTDLIQLQKQISKYNTA----VRNNGGGHFNHTFFWESLAATNKTGQPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLIV--------------TPNGK---LAVTSTPNQDNPLM-DLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFW-SVVNWNKVNER 221          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_PLAVI (Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.179e-28
Identity = 72/208 (34.62%), Postives = 101/208 (48.56%), Query Frame = 1
Query:  139 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS-SLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL                     +  L++++T +A NP+  +    +LT D+WEHAYY+D++N R  Y+  + + LV+W   ++ L+
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLAL-----------------NNNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWN-LVNWNFANENLK 193          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_PLAFX (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3) GN=SODB PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.179e-28
Identity = 72/208 (34.62%), Postives = 101/208 (48.56%), Query Frame = 1
Query:  139 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS-SLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL                     +  L++++T +A NP+  +    +LT D+WEHAYY+D++N R  Y+  + + LV+W   ++ L+
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLAL-----------------NNNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWN-LVNWNFANENLK 193          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODM1_STAA31.044e-2835.68Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODF_CAMJJ1.044e-2836.20Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE1.044e-2836.20Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODM1_BACCR1.363e-2836.45Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM_BACSU1.780e-2835.21Superoxide dismutase [Mn] OS=Bacillus subtilis GN=... [more]
SODM_DEIRA2.325e-2836.56Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODF_PORGI2.325e-2836.97Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODM_ACIAD3.036e-2838.29Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODF_PLAVI5.179e-2834.62Superoxide dismutase [Fe] OS=Plasmodium vivax GN=S... [more]
SODF_PLAFX5.179e-2834.62Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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