CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:193..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_PLAFA (Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.179e-28
Identity = 72/208 (34.62%), Postives = 101/208 (48.56%), Query Frame = 1
Query:  139 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS-SLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL                     +  L++++T +A NP+  +    +LT D+WEHAYY+D++N R  Y+  + + LV+W   ++ L+
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLAL-----------------NNNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWN-LVNWNFANENLK 193          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_PLAF7 (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7) GN=SODB PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.179e-28
Identity = 72/208 (34.62%), Postives = 101/208 (48.56%), Query Frame = 1
Query:  139 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS-SLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL                     +  L++++T +A NP+  +    +LT D+WEHAYY+D++N R  Y+  + + LV+W   ++ L+
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLAL-----------------NNNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWN-LVNWNFANENLK 193          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.507e-27
Identity = 77/221 (34.84%), Postives = 102/221 (46.15%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            FEL+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE    K L  ++ +S         FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY                + K++ L  V T NA  P+  D   LL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKYTEFAS-KDLVSIIKSSSGG-----VFNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYE 199          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM2_PLEBO (Superoxide dismutase [Mn] 2 OS=Plectonema boryanum GN=sodA2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.570e-27
Identity = 70/216 (32.41%), Postives = 103/216 (47.69%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            FELKP PY  +ALEP++   T++ H  KHH AYV+NLN  I         S+ED+V  +    +       NNA    NH  FW                  I   FGS              +FGSGW WLV                   +   L ++ TPN  +PL+  ++ ++  DVWEHAYYL +QNRRP+Y++ + + +++WE +++R +
Sbjct:    3 FELKPLPYAYDALEPYIDATTMQLHHDKHHAAYVNNLNAAIEKYSDLQSMSVEDLVTHLDRVPEDVRTTVRNNAGGHVNHTMFWEIMGANGSGAPTGAISEAINNSFGSFDAFKQQFNDAGTKRFGSGWVWLV-----------------RSQQGDLQILSTPNQDSPLIEGHTPIMGNDVWEHAYYLKYQNRRPEYLNAWWN-VLNWEEINRRFD 200          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.726e-27
Identity = 71/214 (33.18%), Postives = 102/214 (47.66%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLL--PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + L   PY  +ALEP++   T+E H  KHH+ Y++N+N  + GTE  D   +E++V    +  + L  P  NN     NH  FW                  I++D G              ++FGSGWAWL                     DK ++V  T N  +PL    + +L +DVWEHAYYL +QNRRPDYI  F + +V+W+ V +R
Sbjct:    3 YTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYAD-LPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTP-----------------DKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPDYIGAFYN-VVNWDEVERR 197          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.726e-27
Identity = 71/214 (33.18%), Postives = 102/214 (47.66%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLL--PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + L   PY  +ALEP++   T+E H  KHH+ Y++N+N  + GTE  D   +E++V    +  + L  P  NN     NH  FW                  I++D G              ++FGSGWAWL                     DK ++V  T N  +PL    + +L +DVWEHAYYL +QNRRPDYI  F + +V+W+ V +R
Sbjct:    3 YTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYAD-LPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTP-----------------DKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPDYIGAFYN-VVNWDEVERR 197          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.726e-27
Identity = 72/216 (33.33%), Postives = 101/216 (46.76%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            +EL   PY  +ALEP+  K+T+E H+ KHH  YV  LN+ + G      KS E++V  + S  +       N+     NH  FW                  IE +FG+              +FGSGWAWLV                    D  L +V T N  +PL    + +L +DVWEHAYYL FQNRRP+YI  F + +++W+  +KR +
Sbjct:    3 YELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVN------------------DGKLEIVSTANQDSPLSDGKTPVLGLDVWEHAYYLKFQNRRPEYIETFWN-VINWDEANKRFD 199          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.726e-27
Identity = 71/208 (34.13%), Postives = 100/208 (48.08%), Query Frame = 1
Query:  139 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS-SLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL                     +  L++++T +A NP+  +    +LT D+WEHAY +D++N R  Y+  + + LV+W   ++ L+
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGGIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLAL-----------------NNNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYCIDYRNDRASYVKAWWN-LVNWNFANENLK 193          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.479e-27
Identity = 82/219 (37.44%), Postives = 103/219 (47.03%), Query Frame = 1
Query:  139 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-----TELGDGKSLEDV-VIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            Y  NALEPH    T+E H  KHH+AYV+N N  + G      E+  G  + ++  I +  +G L    NNA    NH  FW                  IERDFGS             T+FGSGWAWLV                    +  L VV T N  NPL+    +      LL +DVWEHAYYL FQNRRPDYI  F + +V+W+ V++R E
Sbjct:   10 YAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALR---NNAGGHTNHSLFWKSLKKGTTLQGALKDA--IERDFGSVDAFKAEFEKAAATRFGSGWAWLVLTA-----------------EGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDFVAERFE 205          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.276e-26
Identity = 81/224 (36.16%), Postives = 103/224 (45.98%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +         S+ED++       D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K                  D  L VV T N  +PL+ +  S      ++ +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R
Sbjct:    3 YSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELAKFSVEDLI----KDLDKVPAEKRTFMRNNAGGHANHSLFWKGLKLGTTLTGDLKAA--IERDFGSVDSFKEKFEAAAATRFGSGWAWLVLKD-----------------DGKLAVVSTANQDSPLMGEAVSGASGFPIVGLDVWEHAYYLKFQNRRPDYIKAFWN-VVNWDEAAAR 202          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODF_PLAFA5.179e-2834.62Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAF75.179e-2834.62Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_CAMCO1.507e-2734.84Superoxide dismutase [Fe] OS=Campylobacter coli GN... [more]
SODM2_PLEBO2.570e-2732.41Superoxide dismutase [Mn] 2 OS=Plectonema boryanum... [more]
SODM_XANCP5.726e-2733.18Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_XANC85.726e-2733.18Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_LISMO5.726e-2733.33Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODF_PLAMA5.726e-2734.13Superoxide dismutase [Fe] OS=Plasmodium malariae G... [more]
SODM_HAEIN7.479e-2737.44Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_YEREN1.276e-2636.16Superoxide dismutase [Mn] OS=Yersinia enterocoliti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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