CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.842e-26
Identity = 82/224 (36.61%), Postives = 104/224 (46.43%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K                  DK L VV T N  +PL+ +  S      +L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAAR 201          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.842e-26
Identity = 82/224 (36.61%), Postives = 104/224 (46.43%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K                  DK L VV T N  +PL+ +  S      +L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFADLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAAR 201          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.842e-26
Identity = 82/224 (36.61%), Postives = 104/224 (46.43%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K                  DK L VV T N  +PL+ +  S      +L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAAR 201          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.848e-26
Identity = 81/224 (36.16%), Postives = 104/224 (46.43%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K                  DK L VV T N  +PL+ +  S      ++ +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAAR 201          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM2_STAAB (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodM PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.331e-26
Identity = 71/213 (33.33%), Postives = 102/213 (47.89%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            F+L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV                    +  L +V TPN  NPL    + +L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------NGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDE 193          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.269e-26
Identity = 73/214 (34.11%), Postives = 103/214 (48.13%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            F L+  P+  +++   +S    +FH GKHH+ YV+NLN  I GT+  +  SL D++  S         FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W  Y              L ++K   + +++T NA  P+      LL +DVWEHAYY+D +N RP Y+  F    ++W  VS+  E
Sbjct:    2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDF-EKSSLFDILTKSSGG-----VFNNAAQIYNHDFYWDCLSPKATALSDELKGAL-EKDFGSLEKFKEDFIKSATTLFGSGWNWAAYN-------------LDTQK---IEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH-INWHFVSQCYE 191          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.080e-25
Identity = 70/212 (33.02%), Postives = 98/212 (46.23%), Query Frame = 1
Query:  124 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            L P PY  +ALEPH+   T+E H  KHH+ YV+NLN  + GT   + + +E ++  +A   +    P  NN     NH  FW                  I+   G              T+FGSGWAWL                       SLLV  + N  +PL+   + +L +DVWEHAYYL +QNRRP+YI  F + ++ W  V++R
Sbjct:    5 LPPLPYAYDALEPHIDALTMEIHHSKHHQTYVNNLNAALEGTPYAE-QPVESLLRQLAGLPEKLRTPVVNNGGGHANHSLFWTVMSPQGGGRPDGDLGRAIDEQLGGFEAFKDAFTKAALTRFGSGWAWLSVTPQG-----------------SLLVESSGNQDSPLMNGNTPILGLDVWEHAYYLKYQNRRPEYIGAFYN-VIDWREVARR 197          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.080e-25
Identity = 71/216 (32.87%), Postives = 101/216 (46.76%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            +EL   PY  +ALEP+  K+T+E H+ KHH  YV  LN+ + G      K +E++V  + S  +       N+     NH  FW                  IE +FG+              +FGSGWAWLV                    +  L +V T N  +PL    + +L +DVWEHAYYL FQNRRP+YI  F + +V+W+  +KR +
Sbjct:    3 YELPKLPYTYDALEPNFDKETMELHYTKHHNTYVTKLNEAVSGHPELAEKPVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLVVN------------------NGKLEIVSTANQDSPLSDGKTPVLGLDVWEHAYYLKFQNRRPEYIDTFWN-VVNWDEANKRFD 199          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.142e-25
Identity = 73/214 (34.11%), Postives = 102/214 (47.66%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            F L+  P+  +++   +S    +FH GKHH+ YV+NLN  I GT+    KS    ++   + G     FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W  Y              L ++K   + +++T NA  P+      LL +DVWEHAYY+D +N RP Y+  F    V+W  VS+  E
Sbjct:    2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFE--KSSLFAILTKSSGG----VFNNAAQIYNHDFYWDCLSPKATALSDELKEAL-EKDFGSLEKFKEDFIKSATTLFGSGWNWAAYN-------------LDTQK---IEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH-VNWHFVSQCYE 191          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.000e-25
Identity = 71/216 (32.87%), Postives = 98/216 (45.37%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAFNNAAQAW-NHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            +EL   PY  +ALEP+  K+T+E H+ KHH  YV  LN+ + G  EL      E V        ++  A  N      NH  FW                  IE +FG+              +FGSGWAWLV                    +  L +V T N  +PL    + +L +DVWEHAYYL FQNRRP+YI  F + +++W+  +KR +
Sbjct:    3 YELPKLPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSPNGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVN------------------NGKLEIVSTANQDSPLSEGKTPVLGLDVWEHAYYLKFQNRRPEYIDTFWN-VINWDERNKRFD 199          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODM_SHIFL2.842e-2636.61Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_SALTI2.842e-2636.61Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]
SODM_ECO572.842e-2636.61Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]
SODM_ECOLI4.848e-2636.16Superoxide dismutase [Mn] OS=Escherichia coli (str... [more]
SODM2_STAAB6.331e-2633.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODF_HELPY8.269e-2634.11Superoxide dismutase [Fe] OS=Helicobacter pylori G... [more]
SODM_PSEAE1.080e-2533.02Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]
SODM_LISIN1.080e-2532.87Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]
SODF_HELPJ3.142e-2534.11Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODM_LISIV7.000e-2532.87Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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