CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.559e-24
Identity = 78/225 (34.67%), Postives = 100/225 (44.44%), Query Frame = 1
Query:  124 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKG---DLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            L P PY   +LEPH+   T+  H  KHH+ YV+NLN       L     L+D+ +   NK    D LP        NN    +NH FFW                   IE  FGS              +FGSGWAWL  K                  D SL +  TPN  NPL+           LL +DVWEHAYYL +QNRRP+YI+ + + +V+WE V++
Sbjct:    5 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLN-----AALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWLSVKP-----------------DGSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAWWN-VVNWEQVAE 206          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.537e-24
Identity = 77/215 (35.81%), Postives = 99/215 (46.05%), Query Frame = 1
Query:  139 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGT-ELGDGKSLEDVVIASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            Y  +ALEPH    T+E H  KHH+AYV+N N  +    EL  G   + +   +    D L A  NN     NH  FW                  I RDFGS             T+FGSGWAWLV                  +++  L VV T N  +P++    +      LL +DVWEHAYYL FQNRRPDYI  F   +V+W+ V++R E
Sbjct:   10 YAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLTAIRNNVGGHLNHSLFWKSLKKGTTLQGALKDA--IVRDFGSVEAFQAEFEKAAATRFGSGWAWLVL-----------------QENGKLAVVSTANQDSPVMGKAIAGCEGYPLLGLDVWEHAYYLKFQNRRPDYIKEFW-HVVNWDFVAERFE 204          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.739e-24
Identity = 75/216 (34.72%), Postives = 99/216 (45.83%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVI-ASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            F L   PY  NALEP   + T+  H GKHH+ YV+NLN  I      D  SLE+++   S    D+  A  NN     NH  FW                 +   I ++FGS              +FGSGWAWLV                  ++   L VV T N  NP+    + +L +DVWEHAYYL + N RPDYI  F + LV+W+ V++
Sbjct:    3 FTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVV-----------------DEAGKLKVVSTANQDNPISEGLTPVLGLDVWEHAYYLKYHNVRPDYIEAFFN-LVNWDKVNE 200          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.739e-24
Identity = 75/216 (34.72%), Postives = 99/216 (45.83%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVI-ASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            F L   PY  NALEP   + T+  H GKHH+ YV+NLN  I      D  SLE+++   S    D+  A  NN     NH  FW                 +   I ++FGS              +FGSGWAWLV                  ++   L VV T N  NP+    + +L +DVWEHAYYL + N RPDYI  F + LV+W+ V++
Sbjct:    3 FTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVV-----------------DEAGKLKVVSTANQDNPISEGLTPVLGLDVWEHAYYLKYHNVRPDYIEAFFN-LVNWDKVNE 200          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_HAEDU (Superoxide dismutase [Mn] OS=Haemophilus ducreyi GN=sodA PE=3 SV=4)

HSP 1 Score: 110.923 bits (276), Expect = 7.739e-24
Identity = 75/224 (33.48%), Postives = 102/224 (45.54%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLN----KQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            ++L    Y  +ALEP+  K+T+E H  KHH+AYV+N N    K     E   G  L+D+      K   +   NN     NH  FW                 +  RDFGS             T+FGSGWAWLV +                  +  L VV T N  +P++    +      + T+DVWEHAYYL +QNRRPDYI  F + +V+W+  S+R E
Sbjct:    3 YQLPELGYAYDALEPYFDKETMEIHHSKHHQAYVNNSNALLEKHPELLEKCPGALLKDLTQVPAEKRTAVR--NNLGGHVNHTLFWKGLKTGTTLQGALKDAII--RDFGSVEAFQAEFEQAAATRFGSGWAWLVLE------------------EGKLAVVSTANQDSPIMGKDVAGVSGYPIFTLDVWEHAYYLHYQNRRPDYIKAFWN-VVNWDEASRRFE 203          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.739e-24
Identity = 74/215 (34.42%), Postives = 103/215 (47.91%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNK--GDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            + L   PY  +ALEP++  +T+  H  KHH  YV NLN  I    ELG+ KS+E++ I+  N    D+  A  NN     NH FFW                  I+  FGS              +FGSGWAWLV                    +  L +  TPN  +PL+   + +L +DVWEHAYYL ++N RPDYI  F + +V+W+ V++
Sbjct:    3 YTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGE-KSVENL-ISDMNAIPEDIRTAVRNNGGGHANHTFFWEIMAPNAGGQPTGAIKEAIDETFGSFDEMKAAFKTAATGRFGSGWAWLVVN------------------NGKLEITSTPNQDSPLMDGQTPVLGLDVWEHAYYLKYKNVRPDYIEAFWN-VVNWDKVNE 196          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_PASHA (Superoxide dismutase [Mn] OS=Pasteurella haemolytica GN=sodA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.320e-23
Identity = 72/217 (33.18%), Postives = 98/217 (45.16%), Query Frame = 1
Query:  139 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG----TELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            Y  +ALEPH    T+E H  KHH+AY++N N  +       E   G  ++D+      K   +   NN     NH  FW                  IERDFGS             T+ GSGWAWLV +                  +  L VV T N  NPL+    +      +L +DVWEHAYYL++QNRRPD+I  F + +V+W+  ++R E
Sbjct:   10 YAYDALEPHFDAKTMEIHHSKHHQAYINNANAALEAHPELLEKCPGALIKDLSQVPAEKR--IAVRNNVGGHVNHTLFWKGLKTGTTLQGALKEA--IERDFGSVEAFQSEFEKAATTRVGSGWAWLVLE------------------EGKLAVVSTANQDNPLMGKEVAGVSGYPILVLDVWEHAYYLNYQNRRPDFIKAFWN-VVNWDEAARRFE 203          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.841e-23
Identity = 67/208 (32.21%), Postives = 93/208 (44.71%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLL--PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            PY  +ALEPH+   T+E H  KHH+ YV+ LN  I GTE  +   +E +V A     + L     N+     NH  FW                  I    G              T+FGSGWAWL                      K+L+V  + N  +PL++  + +  +DVWEHAYYL +QNRRP+YI  F + ++ W  V +R
Sbjct:    9 PYAYDALEPHIDAQTMEIHHTKHHQTYVNGLNAAIEGTEWAEWP-VEKLVGAVKQLPESLRGAVTNHGGGHANHSLFWTVMSPQGGGEPHGQLAQAIASQLGGFDAFKEAFTKAALTRFGSGWAWLSVTP-----------------QKTLVVESSGNQDSPLMFGNTPIFGLDVWEHAYYLKYQNRRPEYIGAFYN-VIDWAEVERR 197          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.016e-23
Identity = 66/209 (31.58%), Postives = 93/209 (44.50%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 738
            F+L    YP  ALEPH+   T+E H  KHH AYV NLN  +       G  +E ++  +A+  +       NN     NH  FW                  I+  FG               +FGSGWAWLV                  +    L V+ TPN  NP++  ++ ++ IDVWEHAYYL +QNRR DY+    + +++W+
Sbjct:    5 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLV-----------------KDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRADYLQAIWN-VLNWD 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.016e-23
Identity = 66/209 (31.58%), Postives = 93/209 (44.50%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 738
            F+L    YP  ALEPH+   T+E H  KHH AYV NLN  +       G  +E ++  +A+  +       NN     NH  FW                  I+  FG               +FGSGWAWLV                  +    L V+ TPN  NP++  ++ ++ IDVWEHAYYL +QNRR DY+    + +++W+
Sbjct:    5 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLV-----------------KDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRADYLQAIWN-VLNWD 195          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODM_CHLRE1.559e-2434.67Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM_PASMU4.537e-2435.81Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]
SODM_LACLM7.739e-2434.72Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA7.739e-2434.72Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_HAEDU7.739e-2433.48Superoxide dismutase [Mn] OS=Haemophilus ducreyi G... [more]
SODM_ENTFA7.739e-2434.42Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODM_PASHA1.320e-2333.18Superoxide dismutase [Mn] OS=Pasteurella haemolyti... [more]
SODM_PSEPU3.841e-2332.21Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]
SODM_THET85.016e-2331.58Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET25.016e-2331.58Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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