CN185644

Overview
NameCN185644
Unique NameCN185644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_STRPY (Superoxide dismutase [Mn] OS=Streptococcus pyogenes GN=sodA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 45/148 (30.41%), Postives = 62/148 (41.89%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN     NH  FW                  I+  FGS              +FGSGWAWLV                   K+  L +  T N   P+      +L +DVWEHAYYL+++N RP+YI  F + +++W+ VS   + AK
Sbjct:   73 NNGGGHLNHALFWELLSPEKQDVTPDVAQA-IDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSALYQAAK 201          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.320e-12
Identity = 46/148 (31.08%), Postives = 59/148 (39.86%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN     NH  FW                  I+  FGS             T+FGSGWAWLV                   K+  L V  T N   P+      +L +DVWEHAYY+ ++N RPDYI  F   +++W  V +    AK
Sbjct:   73 NNGGGHLNHALFWELMTPEKTAPSAELAAA-IDATFGSFEEFQAAFTAAATTRFGSGWAWLVVN-----------------KEGKLEVTSTANQDTPISEGKKPILGLDVWEHAYYVKYRNVRPDYIKAFF-SVINWNKVDELYAAAK 201          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.320e-12
Identity = 46/148 (31.08%), Postives = 59/148 (39.86%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN     NH  FW                  I+  FGS             T+FGSGWAWLV                   K+  L V  T N   P+      +L +DVWEHAYY+ ++N RPDYI  F   +++W  V +    AK
Sbjct:   73 NNGGGHLNHALFWELMTPEKTAPSAELAAA-IDATFGSFEEFQAAFTAAATTRFGSGWAWLVVN-----------------KEGKLEVTSTANQDTPISEGKKPILGLDVWEHAYYVKYRNVRPDYIKAFF-SVINWNKVDELYAAAK 201          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_STRAG (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.320e-12
Identity = 45/149 (30.20%), Postives = 63/149 (42.28%), Query Frame = -2
Query:  297 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 743
            NN     NH  FW                  I   FGS              +FGSGWAWLV                    +  L V+ T N   P++     +L +DVWEHAYYL+++N RP+YI  F + +++W  V++  + AKA
Sbjct:   73 NNGGGHLNHALFWELMSPEETQISQELSED-INATFGSFEDFKAAFTAAATGRFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNELYQAAKA 202          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_STRA5 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype V GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.320e-12
Identity = 45/149 (30.20%), Postives = 63/149 (42.28%), Query Frame = -2
Query:  297 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 743
            NN     NH  FW                  I   FGS              +FGSGWAWLV                    +  L V+ T N   P++     +L +DVWEHAYYL+++N RP+YI  F + +++W  V++  + AKA
Sbjct:   73 NNGGGHLNHALFWELMSPEETQISQELSED-INATFGSFEDFKAAFTAAATGRFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNELYQAAKA 202          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_STRA3 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype III GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.320e-12
Identity = 45/149 (30.20%), Postives = 63/149 (42.28%), Query Frame = -2
Query:  297 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 743
            NN     NH  FW                  I   FGS              +FGSGWAWLV                    +  L V+ T N   P++     +L +DVWEHAYYL+++N RP+YI  F + +++W  V++  + AKA
Sbjct:   73 NNGGGHLNHALFWELMSPEETQISQELSED-INATFGSFEDFKAAFTAAATGRFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNELYQAAKA 202          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_DICDI (Superoxide dismutase [Mn], mitochondrial OS=Dictyostelium discoideum GN=sod2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 47/145 (32.41%), Postives = 63/145 (43.45%), Query Frame = -2
Query:  300 NHDFFWXXXXXXXXXXXXXXXXGL---IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPL-VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 722
            NH  FW                 L   I + +GS                GSGW WL Y                 +K    LV++T    +PL V  Y  LL IDVWEHAYYLD++N R DY+     ++V+W++V++R  TAK
Sbjct:   99 NHSIFWTNLAPKNQDGGVAPSGPLADAINKQYGSIEKLIEKMSAETTAIQGSGWGWLGY-----------------DKANDRLVIQTQQNQDPLSVSGYVPLLGIDVWEHAYYLDYKNVRADYVKNIW-QIVNWKNVAERYNTAK 225          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_BUCBP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sodA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 45/149 (30.20%), Postives = 65/149 (43.62%), Query Frame = -2
Query:  315 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 743
            NNA    NH  FW                 ++E++F S             + FGSGW WL+ K                  D +L +V T N   PL+    S      +L +D+WEHAYYL ++N R DY++ F + +V+W+ VS R
Sbjct:   73 NNAGGHINHSLFWKWLKLNTILKDDFKI--ILEKNFKSVDFFKKQFEKIALSHFGSGWIWLIKKY-----------------DNTLRIVTTVNQNTPLMGKEISGISGIPILGLDLWEHAYYLKYKNNRSDYVNAFWN-VVNWDEVSYR 201          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_BUCAP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sodA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 48/150 (32.00%), Postives = 62/150 (41.33%), Query Frame = -2
Query:  312 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 743
            NNA    NH  FW                  I + FGS               FGSGW WLV                   ++  L +V T N  NPL+    S      +  +D+WEHAYYL +QNRR DYI  F + +V+W+  S+RL
Sbjct:   73 NNAGGHINHSLFWKGLKIGTILQGDLKSE--INKQFGSVEYFKSKFEDIALNHFGSGWIWLV------------------NQNGILSIVSTINQDNPLMGKSISGTHGNPIFGLDLWEHAYYLKYQNRRLDYIKSFWN-VVNWDEASRRL 201          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_BORPE (Superoxide dismutase [Mn] OS=Bordetella pertussis GN=sodA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = -2
Query:  297 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 587
            +FGSGWAWL                 P+ +   L V  + N  +PL+   + +L +DVWEHAYYL +QNRRP+YI  F  ++V W  V++R E A A
Sbjct:  126 RFGSGWAWLTVT--------------PAGR---LRVDSSANQDSPLMEGNTPILGLDVWEHAYYLQYQNRRPEYIEAFY-RVVDWAEVARRYEIALA 204          
The following BLAST results are available for this feature:
BLAST of CN185644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
SODM_STRPY2.542e-1230.41Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRR63.320e-1231.08Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRPN3.320e-1231.08Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRAG3.320e-1230.20Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA53.320e-1230.20Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA33.320e-1230.20Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_DICDI2.152e-1132.41Superoxide dismutase [Mn], mitochondrial OS=Dictyo... [more]
SODM_BUCBP2.152e-1130.20Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODM_BUCAP2.152e-1132.00Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODM_BORPE2.152e-1140.21Superoxide dismutase [Mn] OS=Bordetella pertussis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185644 ID=CN185644; Name=CN185644; organism=Citrus sinensis; type=EST; length=807bp
CCCCTTTTTTTTTCTAACAGGCCTGAAAGTATTATTAGTCATCCAAAAAC
TATTTCCCATAAGTAACTCATACATATACTTTGATAGGTTTTATTATACC
CTGATTGTTATAAGAAGAAACCAACACTTTGACAATAGAGATTACTAATC
ACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGT
ATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTC
TCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCT
TTGGCAGTTTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTGTC
CATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAAT
AAGCATGCTCCCATACATCAATAGTAAGGAGAGACGAGTAATCCCAGACA
AGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTT
CTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTGG
CTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCC
GCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAAT
CAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCACCAGGTTTCATGG
ATTCCCAGAAGAAGTCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCT
GGAAGCAAGTCACCCTTGTTGTAAGAAGCAATAACGACATCTTCCAATGA
CTTTCCA
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