CN185644

Overview
NameCN185644
Unique NameCN185644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:453..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.030e-21
Identity = 62/167 (37.13%), Postives = 80/167 (47.90%), Query Frame = -2
Query:  303 SLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL-IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 800
            SLED+V  SY  G   P FNNA Q +NH  FW                   I+ D G             A QFGSGWAWL                  S K+  L + KTPN  NPLV   + +L +DVWEH+YY+D++N RP Y+  F+D L++W+ V +  E A
Sbjct:   52 SLEDIVKKSY--GTNQPLFNNAGQHYNHVHFWKWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFSAAGAGQFGSGWAWL------------------SVKNGKLEISKTPNGENPLVHGATPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYEAA 198          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 62/163 (38.04%), Postives = 77/163 (47.24%), Query Frame = -2
Query:  318 GKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 806
            GKSLE++V +S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K                  D SL +  T  A NPL    + LLT DVWEHAYY+D++N RP Y+  F + LV+W+ V+K
Sbjct:   50 GKSLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKA-----------------DGSLALASTIGAGNPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWDFVAK 189          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.662e-19
Identity = 60/166 (36.14%), Postives = 77/166 (46.39%), Query Frame = -2
Query:  309 GKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 806
            GK+LE++V +S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K                  D SL +  T  A  PL    + LLT DVWEHAYY+D++N RP Y+  F + LV+W  V+++ E
Sbjct:   50 GKTLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKA-----------------DGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWAFVAEQFE 192          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.662e-19
Identity = 58/165 (35.15%), Postives = 76/165 (46.06%), Query Frame = -2
Query:  312 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWD-YSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 803
            KSLE+++  S         FNNAAQ WNH F+W                  IE+ FGS               FGS W WLV                    + SL +V T NA  P+  +  + LLT+D+WEHAYY+D++N RP Y+  F   LV+W+ VSK L
Sbjct:   50 KSLEEIIKTSTGG-----VFNNAAQVWNHTFYWNCLAPNAGGEPTGEVAAAIEKAFGSFAEFKAKFTDSAINNFGSSWTWLV-----------------KNANGSLAIVNTSNAGCPITEEGVTPLLTVDLWEHAYYIDYRNLRPSYMDGFW-ALVNWDFVSKNL 191          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 60/166 (36.14%), Postives = 76/166 (45.78%), Query Frame = -2
Query:  309 GKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 806
            GK+LE++V  S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K                  D SL +  T  A  PL    + LLT DVWEHAYY+D++N RP Y+  F + LV+W  V+++ E
Sbjct:   50 GKTLEEIVKTS--SGGI---FNNAAQVWNHTFYWNCLAPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKA-----------------DGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWAFVAEQFE 192          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.246e-19
Identity = 59/161 (36.65%), Postives = 73/161 (45.34%), Query Frame = -2
Query:  318 SLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 800
            SLE++V  S         FNNAAQ WNH F+W                  I+  +GS            A  FGSGW WLV K                  D +L +V T NA  PL     +LLT DVWEHAYY+D++N RP Y+  F   LV+WE  +K
Sbjct:   52 SLEEIVKKSSGG-----VFNNAAQVWNHTFYWNSLSPNGGGEPSGALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKA-----------------DGTLDIVNTSNAATPLTTADKALLTCDVWEHAYYIDYRNARPKYLENFW-ALVNWEFAAK 189          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.391e-18
Identity = 51/147 (34.69%), Postives = 69/147 (46.94%), Query Frame = -2
Query:  306 FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLET 746
            FNNAAQ WNH F+W                  I++ FGS               FGSGWAWLV                  + +  L V+ T NA NP+      L+T DVWEHAYY+D +N RP Y++ F  ++V+W+ V K  ++
Sbjct:   65 FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLV-----------------KDNNGKLEVLSTVNARNPMTEGKKPLMTCDVWEHAYYIDTRNDRPKYVNNFW-QVVNWDFVMKNFKS 193          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.817e-18
Identity = 54/148 (36.49%), Postives = 68/148 (45.95%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN     NH  FW                  I  +FGS            A +FGSGWAWLV                    D  L +  TPN   PL+   + +L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V+KR   AK
Sbjct:   74 NNGGGHANHTLFWQILSPNGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLVVN------------------DGKLEITSTPNQDTPLMEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVAKRYNEAK 202          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.374e-18
Identity = 57/159 (35.85%), Postives = 72/159 (45.28%), Query Frame = -2
Query:  330 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWD-YSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 803
            KSLE++V +S         FNNAAQ WNH F+W                  I   +GS               FGS W WLV                    D SL +V T NA  PL  D  + +LT+D+WEHAYY+D++N RPDY+  F   LV+WE
Sbjct:   50 KSLEEIVCSSDGG-----VFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLV-----------------KLADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKGFW-SLVNWE 185          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.049e-18
Identity = 54/148 (36.49%), Postives = 67/148 (45.27%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN     NH FFW                  IE  FGS            AT+FGSGWAWLV                    +  L V  TPN  +PL    + ++ +DVWEHAYYL++QNRRPDYI  F + +V W +  KR + AK
Sbjct:   90 NNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVN------------------NGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWN-VVDWNAAEKRYQEAK 218          
The following BLAST results are available for this feature:
BLAST of CN185644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
SODF_RHIME1.030e-2137.13Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODF_PSEAE1.138e-2038.04Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODF_PSEPK3.662e-1936.14Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_PHOLE3.662e-1935.15Superoxide dismutase [Fe] OS=Photobacterium leiogn... [more]
SODF_PSEPU4.782e-1936.14Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_BORPE6.246e-1936.65Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODF_COXBU1.391e-1834.69Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]
SODM_BACHD1.817e-1836.49Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODF_PSEHT2.374e-1835.85Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODM1_BACCR4.049e-1836.49Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185644 ID=CN185644; Name=CN185644; organism=Citrus sinensis; type=EST; length=807bp
CCCCTTTTTTTTTCTAACAGGCCTGAAAGTATTATTAGTCATCCAAAAAC
TATTTCCCATAAGTAACTCATACATATACTTTGATAGGTTTTATTATACC
CTGATTGTTATAAGAAGAAACCAACACTTTGACAATAGAGATTACTAATC
ACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGT
ATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTC
TCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCT
TTGGCAGTTTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTGTC
CATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAAT
AAGCATGCTCCCATACATCAATAGTAAGGAGAGACGAGTAATCCCAGACA
AGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTT
CTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTGG
CTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCC
GCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAAT
CAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCACCAGGTTTCATGG
ATTCCCAGAAGAAGTCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCT
GGAAGCAAGTCACCCTTGTTGTAAGAAGCAATAACGACATCTTCCAATGA
CTTTCCA
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