CN185644

Overview
NameCN185644
Unique NameCN185644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:453..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.049e-18
Identity = 54/148 (36.49%), Postives = 67/148 (45.27%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN     NH FFW                  IE  FGS            AT+FGSGWAWLV                    +  L V  TPN  +PL    + ++ +DVWEHAYYL++QNRRPDYI  F + +V W +  KR + AK
Sbjct:   75 NNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVN------------------NGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWN-VVDWNAAEKRYQEAK 203          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.538e-17
Identity = 59/154 (38.31%), Postives = 71/154 (46.10%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NNA    NH  FW                  IERDFGS            AT+FGSGWAWLV K                  D  L VV T N  +PL+ +  S      ++ +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R   AK
Sbjct:   74 NNAGGHANHSLFWKGLKLGTTLTGDLKAA--IERDFGSVDSFKEKFEAAAATRFGSGWAWLVLKD-----------------DGKLAVVSTANQDSPLMGEAVSGASGFPIVGLDVWEHAYYLKFQNRRPDYIKAFWN-VVNWDEAAARFAQAK 207          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.427e-17
Identity = 51/149 (34.23%), Postives = 69/149 (46.31%), Query Frame = -2
Query:  297 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 743
            NN     NH  FW                  I + FGS            A +FGSGWAWLV                    +  L +  TPN  +P++   + +L +DVWEHAYYL +QNRRP+YI+ F + +V+W+ V+KR   AKA
Sbjct:   74 NNGGGHANHSLFWTILSPNGGGEPTGELAEAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVN------------------NGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPEYIAAFWN-IVNWDEVAKRYSEAKA 203          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.476e-17
Identity = 60/155 (38.71%), Postives = 71/155 (45.81%), Query Frame = -2
Query:  297 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 743
            NNA    NH  FW                  IERDFGS            AT+FGSGWAWLV                    +  L VV T N  NPL+    +      LL +DVWEHAYYL FQNRRPDYI  F + +V+W+ V++R E   A
Sbjct:   75 NNAGGHTNHSLFWKSLKKGTTLQGALKDA--IERDFGSVDAFKAEFEKAAATRFGSGWAWLVLTA-----------------EGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDFVAERFEQKTA 209          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.476e-17
Identity = 51/149 (34.23%), Postives = 69/149 (46.31%), Query Frame = -2
Query:  297 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 743
            NN     NH  FW                  I + FGS            A +FGSGWAWLV                    +  L +  TPN  +P++   + +L +DVWEHAYYL +QNRRP+YI+ F + +V+W+ V+KR   AKA
Sbjct:   74 NNGGGHANHSLFWTILSPNGGGEPTGELADAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVN------------------NGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPEYIAAFWN-VVNWDEVAKRYSEAKA 203          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.476e-17
Identity = 59/175 (33.71%), Postives = 79/175 (45.14%), Query Frame = -2
Query:  303 GKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL-------IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 806
            GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY                + K++ L  V T NA  P+  D   LL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E A
Sbjct:   49 GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYEWA 201          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.476e-17
Identity = 59/175 (33.71%), Postives = 79/175 (45.14%), Query Frame = -2
Query:  303 GKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL-------IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 806
            GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY                + K++ L  V T NA  P+  D   LL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E A
Sbjct:   49 GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYEWA 201          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.846e-17
Identity = 54/149 (36.24%), Postives = 70/149 (46.98%), Query Frame = -2
Query:  300 FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 746
            FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W  Y              L ++K   + +++T NA  P+      LL +DVWEHAYY+D +N RP Y+  F    V+W  VS+  E AK
Sbjct:   64 FNNAAQIYNHDFYWDCLSPKATALSDELKEAL-EKDFGSLEKFKEDFIKSATTLFGSGWNWAAYN-------------LDTQK---IEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH-VNWHFVSQCYEWAK 194          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.846e-17
Identity = 58/166 (34.94%), Postives = 76/166 (45.78%), Query Frame = -2
Query:  312 GKSLEDVVIASYNKGDLLPAFNNAAQAWNHD-FFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 806
            GK++E  ++AS   G +   FNNA Q  NH  +F                   I+RDFGS               FGSGWAWL                   +KD  L + K PN  NP+      LL  DVWEHAYYLD+QNRR D+++   + ++ W+ V KRL
Sbjct:   50 GKTVE-AIVASAPDGAI---FNNAGQVLNHTLYFLQFAPKPAKNEPAGKLGEAIKRDFGSFENFKKEFNAASVGLFGSGWAWLSV-----------------DKDGKLHITKEPNGSNPVRAGLKPLLGFDVWEHAYYLDYQNRRADHVNKLWE-IIDWDVVEKRL 193          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.846e-17
Identity = 58/167 (34.73%), Postives = 74/167 (44.31%), Query Frame = -2
Query:  309 GKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSS-LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 806
            G  LE   I     G     FNNAAQ WNH F+W                  IE  FGS            A  FGSGW WLV K                  D +  +V+T +A +PL  +    LL  DVWEHAYY+D++N R  YI+ + + LV+W+  +K LE
Sbjct:   45 GTPLESCTIEELILGQTGAVFNNAAQIWNHTFYWNSMGPNCGGEPTGPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLKD-----------------DGTADIVQTHDAGSPLKENLGRPLLCCDVWEHAYYIDYKNDRLSYINSWWN-LVNWDFANKNLE 193          
The following BLAST results are available for this feature:
BLAST of CN185644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
SODM1_BACAN4.049e-1836.49Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODM_YEREN1.538e-1738.31Superoxide dismutase [Mn] OS=Yersinia enterocoliti... [more]
SODM_BACCA3.427e-1734.23Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM_HAEIN4.476e-1738.71Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_BACST4.476e-1734.23Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]
SODF_CAMJJ4.476e-1733.71Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE4.476e-1733.71Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_HELPJ5.846e-1736.24Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODF_BACFR5.846e-1734.94Superoxide dismutase [Fe] OS=Bacteroides fragilis ... [more]
SODF_BABBO5.846e-1734.73Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185644 ID=CN185644; Name=CN185644; organism=Citrus sinensis; type=EST; length=807bp
CCCCTTTTTTTTTCTAACAGGCCTGAAAGTATTATTAGTCATCCAAAAAC
TATTTCCCATAAGTAACTCATACATATACTTTGATAGGTTTTATTATACC
CTGATTGTTATAAGAAGAAACCAACACTTTGACAATAGAGATTACTAATC
ACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGT
ATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTC
TCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCT
TTGGCAGTTTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTGTC
CATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAAT
AAGCATGCTCCCATACATCAATAGTAAGGAGAGACGAGTAATCCCAGACA
AGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTT
CTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTGG
CTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCC
GCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAAT
CAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCACCAGGTTTCATGG
ATTCCCAGAAGAAGTCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCT
GGAAGCAAGTCACCCTTGTTGTAAGAAGCAATAACGACATCTTCCAATGA
CTTTCCA
back to top