CN185644

Overview
NameCN185644
Unique NameCN185644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:453..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 53/149 (35.57%), Postives = 70/149 (46.98%), Query Frame = -2
Query:  300 FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 746
            FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W  Y              L ++K   + +++T NA  P+      LL +DVWEHAYY+D +N RP Y+  F    ++W  VS+  E AK
Sbjct:   64 FNNAAQIYNHDFYWDCLSPKATALSDELKGAL-EKDFGSLEKFKEDFIKSATTLFGSGWNWAAYN-------------LDTQK---IEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH-INWHFVSQCYEWAK 194          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 57/169 (33.73%), Postives = 76/169 (44.97%), Query Frame = -2
Query:  303 KSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 803
            KS+E++V  + S          NN     NH  FW                  I+ ++GS            A QFGSGWAWLV                  +KD  L +V TPN  NP+    + +L +DVWEHAYYL +QN+RPDYI  F + +V+W  V +  E A
Sbjct:   51 KSIEEIVANLDSVPSDIQTAVRNNGGGHLNHSLFWQLLTPNSEEKGTVIDK--IKEEWGSLDKFKDEFAKKAAGQFGSGWAWLVV-----------------DKDGKLEIVSTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYIDAFWN-VVNWNKVDELYEAA 199          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 53/155 (34.19%), Postives = 71/155 (45.81%), Query Frame = -2
Query:  303 FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL-------IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 746
            FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY                + K++ L  V T NA  P+  D   LL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E A
Sbjct:   64 FNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYEWA 201          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16
Identity = 60/154 (38.96%), Postives = 71/154 (46.10%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NNA    NH  FW                  IERDFGS            AT+FGSGWAWLV K                  DK L VV T N  +PL+ +  S      +L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R    K
Sbjct:   74 NNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16
Identity = 60/154 (38.96%), Postives = 71/154 (46.10%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NNA    NH  FW                  IERDFGS            AT+FGSGWAWLV K                  DK L VV T N  +PL+ +  S      +L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R    K
Sbjct:   74 NNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16
Identity = 58/158 (36.71%), Postives = 72/158 (45.57%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXG----LIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDY------SSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NNA    NH  FW                G     I   FGS             T+FGSGWAWLV K                  D  L VV T N  NPL+ +       + +L +DVWEHAYYL++QNRRPDY++ F + +V+W+ VSKR   AK
Sbjct:   73 NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVK------------------DGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKRYAAAK 211          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_METJ (Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=sodB PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16
Identity = 51/152 (33.55%), Postives = 67/152 (44.08%), Query Frame = -2
Query:  297 PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 752
            P  NN     NH  FW                  I+ D G              T+FGSGWAWL                     +K L+V  T N  +PL    + +L +DVWEHAYYL +QNRRP+YI  F + +V+W+ VS+R + A A
Sbjct:   69 PVRNNGGGHANHSLFWKVLTPNGGGEPKGALADAIKSDIGGLDTFKEAFTKAALTRFGSGWAWLSVTP-----------------EKKLVVESTGNQDSPLSTGNTPILGLDVWEHAYYLKYQNRRPEYIGAFFN-VVNWDEVSRRYQEALA 202          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.701e-16
Identity = 50/152 (32.89%), Postives = 66/152 (43.42%), Query Frame = -2
Query:  297 PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 752
            P  NN     NH  FW                  I++D G              ++FGSGWAWL                     DK ++V  T N  +PL    + +L +DVWEHAYYL +QNRRPDYI  F + +V+W+ V +R   A A
Sbjct:   70 PVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTP-----------------DKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPDYIGAFYN-VVNWDEVERRYHAAIA 203          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.701e-16
Identity = 50/152 (32.89%), Postives = 66/152 (43.42%), Query Frame = -2
Query:  297 PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 752
            P  NN     NH  FW                  I++D G              ++FGSGWAWL                     DK ++V  T N  +PL    + +L +DVWEHAYYL +QNRRPDYI  F + +V+W+ V +R   A A
Sbjct:   70 PVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTP-----------------DKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPDYIGAFYN-VVNWDEVERRYHAAIA 203          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16
Identity = 57/170 (33.53%), Postives = 77/170 (45.29%), Query Frame = -2
Query:  300 KSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 803
            KS+E++V  + S  +       NN     NH  FW                  I+  +GS            A +FGSGWAWLV                    + +L +V TPN  NPL    + +L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +    AK
Sbjct:   51 KSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDAFKEEFADKAAARFGSGWAWLVVN------------------NGNLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
The following BLAST results are available for this feature:
BLAST of CN185644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
SODF_HELPY7.635e-1735.57Superoxide dismutase [Fe] OS=Helicobacter pylori G... [more]
SODM_STACA9.972e-1733.73Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODF_CAMCO9.972e-1734.19Superoxide dismutase [Fe] OS=Campylobacter coli GN... [more]
SODM_SALTY1.302e-1638.96Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_SALTI1.302e-1638.96Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]
SODM_DEIRA1.302e-1636.71Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODF_METJ1.302e-1633.55Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=... [more]
SODM_XANCP1.701e-1632.89Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_XANC81.701e-1632.89Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_STAS12.901e-1633.53Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185644 ID=CN185644; Name=CN185644; organism=Citrus sinensis; type=EST; length=807bp
CCCCTTTTTTTTTCTAACAGGCCTGAAAGTATTATTAGTCATCCAAAAAC
TATTTCCCATAAGTAACTCATACATATACTTTGATAGGTTTTATTATACC
CTGATTGTTATAAGAAGAAACCAACACTTTGACAATAGAGATTACTAATC
ACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGT
ATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTC
TCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCT
TTGGCAGTTTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTGTC
CATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAAT
AAGCATGCTCCCATACATCAATAGTAAGGAGAGACGAGTAATCCCAGACA
AGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTT
CTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTGG
CTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCC
GCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAAT
CAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCACCAGGTTTCATGG
ATTCCCAGAAGAAGTCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCT
GGAAGCAAGTCACCCTTGTTGTAAGAAGCAATAACGACATCTTCCAATGA
CTTTCCA
back to top