CN185644

Overview
NameCN185644
Unique NameCN185644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:453..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15
Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN     NH FFW                  I+  FGS              +FGSGWAWLV                    +  L +  TPN  +PL+   + +L +DVWEHAYYL ++N RPDYI  F + +V+W+ V++    AK
Sbjct:   74 NNGGGHANHTFFWEIMAPNAGGQPTGAIKEAIDETFGSFDEMKAAFKTAATGRFGSGWAWLVVN------------------NGKLEITSTPNQDSPLMDGQTPVLGLDVWEHAYYLKYKNVRPDYIEAFWN-VVNWDKVNELFAAAK 202          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_ENTHI (Superoxide dismutase [Fe] OS=Entamoeba histolytica GN=SODB PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.190e-15
Identity = 49/145 (33.79%), Postives = 65/145 (44.83%), Query Frame = -2
Query:  312 FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 746
            +NNAAQAWNH F+W                 L    FG                FGSGW WLV                  E D  L ++ T +AVNP+      LLT DVWEHAYY+D +N R  Y+  + + +V+W+ V ++L
Sbjct:   66 YNNAAQAWNHAFYWKCMCGCGVKPSEQLIAKLTAA-FGGLEEFKKKFTEKAVGHFGSGWCWLV------------------EHDGKLEIIDTHDAVNPMTNGMKPLLTCDVWEHAYYIDTRNNRAAYLEHWWN-VVNWKFVEEQL 190          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 55/151 (36.42%), Postives = 69/151 (45.70%), Query Frame = -2
Query:  309 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 743
            NN     NH  FW                  I RDFGS            AT+FGSGWAWLV                  +++  L VV T N  +P++    +      LL +DVWEHAYYL FQNRRPDYI  F   +V+W+ V++R E
Sbjct:   74 NNVGGHLNHSLFWKSLKKGTTLQGALKDA--IVRDFGSVEAFQAEFEKAAATRFGSGWAWLVL-----------------QENGKLAVVSTANQDSPVMGKAIAGCEGYPLLGLDVWEHAYYLKFQNRRPDYIKEFW-HVVNWDFVAERFE 204          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM2_STAAW (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MW2) GN=sodM PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    + +L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  + AK
Sbjct:   73 NNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM2_STAAS (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MSSA476) GN=sodM PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    + +L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  + AK
Sbjct:   73 NNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM2_STAAR (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MRSA252) GN=sodM PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    + +L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  + AK
Sbjct:   73 NNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM2_STAAN (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain N315) GN=sodM PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    + +L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  + AK
Sbjct:   73 NNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM2_STAAM (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodM PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    + +L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  + AK
Sbjct:   73 NNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM2_STAAC (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain COL) GN=sodM PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    + +L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  + AK
Sbjct:   73 NNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM2_STAA8 (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodM PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN    +NH  FW                  I+  +G+             T FGSGW WLV                    D  L +V TPN  NPL    + +L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  + AK
Sbjct:   73 NNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------DGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
The following BLAST results are available for this feature:
BLAST of CN185644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
SODM_ENTFA4.190e-1532.43Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODF_ENTHI4.190e-1533.79Superoxide dismutase [Fe] OS=Entamoeba histolytica... [more]
SODM_PASMU5.472e-1536.42Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]
SODM2_STAAW5.472e-1532.43Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAS5.472e-1532.43Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAR5.472e-1532.43Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAN5.472e-1532.43Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAM5.472e-1532.43Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAC5.472e-1532.43Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAA85.472e-1532.43Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185644 ID=CN185644; Name=CN185644; organism=Citrus sinensis; type=EST; length=807bp
CCCCTTTTTTTTTCTAACAGGCCTGAAAGTATTATTAGTCATCCAAAAAC
TATTTCCCATAAGTAACTCATACATATACTTTGATAGGTTTTATTATACC
CTGATTGTTATAAGAAGAAACCAACACTTTGACAATAGAGATTACTAATC
ACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGT
ATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTC
TCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCT
TTGGCAGTTTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTGTC
CATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAAT
AAGCATGCTCCCATACATCAATAGTAAGGAGAGACGAGTAATCCCAGACA
AGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTT
CTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTGG
CTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCC
GCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAAT
CAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCACCAGGTTTCATGG
ATTCCCAGAAGAAGTCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCT
GGAAGCAAGTCACCCTTGTTGTAAGAAGCAATAACGACATCTTCCAATGA
CTTTCCA
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