CN185644

Overview
NameCN185644
Unique NameCN185644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:453..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 51/168 (30.36%), Postives = 74/168 (44.05%), Query Frame = -2
Query:  303 KSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS-SLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 803
            KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL                     +  L++++T +A NP+  +    +LT D+WEHAY +D++N R  Y+  + + LV+W   ++ L+ A
Sbjct:   51 KSLLDIVKESSGA-----IFNNAAQIWNHTFYWDSMGPDCGGEPHGGIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALN-----------------NNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYCIDYRNDRASYVKAWWN-LVNWNFANENLKKA 195          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 56/153 (36.60%), Postives = 69/153 (45.10%), Query Frame = -2
Query:  303 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL-IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSS-----LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 743
            NN    +NH FFW                   I +DFGS            + +FGSGWAWL+                P+ K   L V  TPN  NPL+ D S      LL +DVWEHAYYL +QNRR DYI  F   +V+W  V++R   A
Sbjct:   92 NNGGGHFNHTFFWESLAATNKTGQPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLIVT--------------PNGK---LAVTSTPNQDNPLM-DLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFW-SVVNWNKVNERYNEA 225          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 48/152 (31.58%), Postives = 63/152 (41.45%), Query Frame = -2
Query:  297 PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 752
            P  NN     NH  FW                  I+   G              T+FGSGWAWL                       SLLV  + N  +PL+   + +L +DVWEHAYYL +QNRRP+YI  F + ++ W  V++R   A A
Sbjct:   70 PVVNNGGGHANHSLFWTVMSPQGGGRPDGDLGRAIDEQLGGFEAFKDAFTKAALTRFGSGWAWLSVTPQG-----------------SLLVESSGNQDSPLMNGNTPILGLDVWEHAYYLKYQNRRPEYIGAFYN-VIDWREVARRYAQALA 203          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM2_STAAB (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodM PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.079e-14
Identity = 47/148 (31.76%), Postives = 65/148 (43.92%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN    +NH  FW                  I+  +G+             T FGSGW WLV                    +  L +V TPN  NPL    + +L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  + AK
Sbjct:   73 NNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVN------------------NGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.079e-14
Identity = 47/144 (32.64%), Postives = 62/144 (43.06%), Query Frame = -2
Query:  315 FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 746
            FNNA Q  NH+ ++                  I++ FGS             T FGSGW WL                  S+ +  L + K PNA NP+    + LL  DVWEHAYYL +QNRR D++      +V W+ V  R
Sbjct:   65 FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLA-----------------SDANGKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYYLTYQNRRADHLKDLW-SIVDWDIVESR 190          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_BORBU (Superoxide dismutase [Fe] OS=Borrelia burgdorferi GN=sod PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.032e-13
Identity = 48/142 (33.80%), Postives = 61/142 (42.96%), Query Frame = -2
Query:  318 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 743
            NNA    NH  ++                  I   FGS               FGSGWAWLV                    +  L V+  PN  +PL+  Y  +L IDVWEHAYYL +QNRR +Y+  F+ K ++WE VSK
Sbjct:   73 NNAGGYSNHTLYFRTLRPGNKDNLFEKFKDDINAAFGSLDVLKANLKDTAMKIFGSGWAWLVLCP-----------------ESGLKVISMPNQDSPLMNSYKPILGIDVWEHAYYLKYQNRRIEYVDAFL-KALNWEEVSK 196          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.299e-13
Identity = 49/151 (32.45%), Postives = 65/151 (43.05%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL---IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN     NH  FW                 +   I ++FGS              +FGSGWAWLV                  ++   L VV T N  NP+    + +L +DVWEHAYYL + N RPDYI  F + LV+W+ V++    AK
Sbjct:   74 NNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVV-----------------DEAGKLKVVSTANQDNPISEGLTPVLGLDVWEHAYYLKYHNVRPDYIEAFFN-LVNWDKVNELYAKAK 206          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.299e-13
Identity = 49/151 (32.45%), Postives = 65/151 (43.05%), Query Frame = -2
Query:  300 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGL---IERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 743
            NN     NH  FW                 +   I ++FGS              +FGSGWAWLV                  ++   L VV T N  NP+    + +L +DVWEHAYYL + N RPDYI  F + LV+W+ V++    AK
Sbjct:   74 NNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVV-----------------DEAGKLKVVSTANQDNPISEGLTPVLGLDVWEHAYYLKYHNVRPDYIEAFFN-LVNWDKVNELYAKAK 206          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13
Identity = 42/138 (30.43%), Postives = 59/138 (42.75%), Query Frame = -2
Query:  330 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 743
            NN     NH  FW                  I+  FG               +FGSGWAWLV                  +    L V+ TPN  NP++  ++ ++ IDVWEHAYYL +QNRR DY+    + +++W+
Sbjct:   76 NNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLV-----------------KDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRADYLQAIWN-VLNWD 195          
BLAST of CN185644 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13
Identity = 42/138 (30.43%), Postives = 59/138 (42.75%), Query Frame = -2
Query:  330 NNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 743
            NN     NH  FW                  I+  FG               +FGSGWAWLV                  +    L V+ TPN  NP++  ++ ++ IDVWEHAYYL +QNRR DY+    + +++W+
Sbjct:   76 NNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLV-----------------KDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRADYLQAIWN-VLNWD 195          
The following BLAST results are available for this feature:
BLAST of CN185644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
SODF_PLAMA5.472e-1530.36Superoxide dismutase [Fe] OS=Plasmodium malariae G... [more]
SODM_ACIAD1.219e-1436.60Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODM_PSEAE1.592e-1431.58Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]
SODM2_STAAB2.079e-1431.76Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODF_PORGI2.079e-1432.64Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODM_BORBU1.032e-1333.80Superoxide dismutase [Fe] OS=Borrelia burgdorferi ... [more]
SODM_LACLM2.299e-1332.45Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA2.299e-1332.45Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_THET85.122e-1330.43Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET25.122e-1330.43Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185644 ID=CN185644; Name=CN185644; organism=Citrus sinensis; type=EST; length=807bp
CCCCTTTTTTTTTCTAACAGGCCTGAAAGTATTATTAGTCATCCAAAAAC
TATTTCCCATAAGTAACTCATACATATACTTTGATAGGTTTTATTATACC
CTGATTGTTATAAGAAGAAACCAACACTTTGACAATAGAGATTACTAATC
ACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGT
ATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTC
TCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCT
TTGGCAGTTTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTGTC
CATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAAT
AAGCATGCTCCCATACATCAATAGTAAGGAGAGACGAGTAATCCCAGACA
AGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTT
CTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTGG
CTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCC
GCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAAT
CAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCACCAGGTTTCATGG
ATTCCCAGAAGAAGTCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCT
GGAAGCAAGTCACCCTTGTTGTAAGAAGCAATAACGACATCTTCCAATGA
CTTTCCA
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