CN185641

Overview
NameCN185641
Unique NameCN185641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 45/120 (37.50%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  317 LVNPLNQGMVVIEGTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVE--EEESGYKRYERR 670
            L   L QG+ +  G+  L    +        PPA+KA V+++P + +   + +  G +C VCL E+E  E  REMPCKH FH  CI  WL    SCP+CR ++P +  + E   K  ERR
Sbjct:   27 LARSLMQGLDIDSGSFDLSDWDQRL-----PPPAAKAVVQSLPVVIISPEQADK-GVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKERR 140          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGYKRYER 667
            PPA+K +VE +P   +  S+ E    +C VCL E+E  E A EMPC H FH+NCI  WL    SCP+CR+++P +++   Y+ ++R
Sbjct:   52 PPAAKTAVENLPRTVIRGSQAEL---KCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDT--YEEHKR 132          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEE 640
            PPA+KA VE++P   +  S+ E    +C VCL E+E  E   EMPC H FH+NCI  WL    SCP+CR+++P +++
Sbjct:   64 PPAAKAVVESLPRTVIRSSKAEL---KCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDD 137          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  356 GTSSLETLLRNFVGK---DGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEE 637
            G + L+ ++   +G+    G PPA K  + ++P++ V + E+   G EC VC E+Y V E  R++PC H FH++CI  WL +  +CPVCR  +  E+
Sbjct:  182 GQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQ-EQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGED 277          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: PJA1_MOUSE (E3 ubiquitin-protein ligase Praja1 OS=Mus musculus GN=Pja1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 628
            PPASK S++A+P I V E +  A+G E  C +C  EY  GEVA E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  502 PPASKESIDALPEILVTE-DHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 575          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: PJA1_HUMAN (E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens GN=PJA1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 628
            PPASK S++A+P I V E +  A+G E  C +C  EY  GEVA E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  567 PPASKESIDALPEILVTE-DHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 640          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEE 640
            PPA+KA VE++P   +  ++ +    +C VCL E+E  E   EMPC H FH+NCI  WL    SCP+CR+++P +++
Sbjct:   64 PPAAKAVVESLPRTVISSAKADL---KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDD 137          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGYKRYER 667
            PPA+K  VE +P   +  S+ E    +C VCL E+E  E A EMPC H FH++CI  WL    SCP+CRY++P +++   Y+ + R
Sbjct:   52 PPAAKTVVENLPRTVIRGSQAEL---KCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDT--YEEHRR 132          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RNF44_RAT (RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  419 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            +KA +E +PS +      ++    CVVC  ++EV ++ R +PC H+FHA C++KWL    +CP+CR
Sbjct:  274 TKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 339          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RNF44_MOUSE (RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  419 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            +KA +E +PS +      ++    CVVC  ++EV ++ R +PC H+FHA C++KWL    +CP+CR
Sbjct:  331 TKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 396          
The following BLAST results are available for this feature:
BLAST of CN185641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RN181_DANRE1.603e-1437.50E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
RN181_BOVIN1.603e-1443.02E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
RN181_RAT2.094e-1445.45E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN115_MOUSE2.735e-1437.11RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
PJA1_MOUSE2.735e-1450.67E3 ubiquitin-protein ligase Praja1 OS=Mus musculus... [more]
PJA1_HUMAN2.735e-1450.67E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens... [more]
RN181_MOUSE3.572e-1442.86E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN181_HUMAN4.665e-1443.02E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]
RNF44_RAT5.703e-1239.39RING finger protein 44 OS=Rattus norvegicus GN=Rnf... [more]
RNF44_MOUSE5.703e-1239.39RING finger protein 44 OS=Mus musculus GN=Rnf44 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185641 ID=CN185641; Name=CN185641; organism=Citrus sinensis; type=EST; length=692bp
CGTCTTAAAGGCAGATTCTTCTTCTCCTTTTTTTTTTCCTCTTAAAAATC
GGATTGTTGATCACCCTAGTACAGATCTCTCAGAAAAGATTTGATCTTTC
TGTCAAAATTTCATTCTTTCGATGTCCTCTGAAGCTGAAGCTACTGATGT
CTCATCGCTGTTTGAGAGACTGTTAAGTCACAGAGACATGTCTTTGTGTC
TACCCTTTGTCTTAGGCTTCACAAGCAGCGTCTCCACAGGTGAAAGTTCC
CAGAATTCTCAGAACCCGGATGGGGAAACCCCTCATACAAACAGAAGTTC
AAGCGAAAGAATCATTCTCGTCAATCCTCTCAATCAGGGCATGGTAGTGA
TTGAAGGGACTTCAAGTTTAGAGACTCTGCTGAGAAATTTCGTTGGTAAA
GATGGCCAGCCTCCTGCTTCAAAGGCATCGGTTGAGGCCATGCCAAGTAT
CAAAGTCGGTGAAAGCGAAGAGGAAGCTCTTGGTGGTGAGTGTGTCGTGT
GTTTAGAGGAGTATGAGGTTGGGGAGGTGGCGAGAGAGATGCCATGTAAG
CACAAGTTTCATGCAAACTGTATAGAGAAGTGGCTTGGGATTCAGGGGTC
GTGTCCTGTTTGTAGATACAAGATGCCTGTTGAAGAAGAGGAAAGTGGCT
ACAAAAGATATGAGCGAAGGATAGAAATTTGGGTTAGTTTTT
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