CN185641

Overview
NameCN185641
Unique NameCN185641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13756 contig Csv1_Contig13756:8..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 51/177 (28.81%), Postives = 84/177 (47.46%), Query Frame = 2
Query:  155 SLFERLLSHRDMSL---------CLPFVLGFTSSVSTGESSQNSQNPDGETPHTNRSSSERIILVNPLNQGMVVIEGTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGG---ECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEES 646
            ++F R  SHR ++          CLP+V     S S G + ++ ++          S    +++V  LN G  + E  +    +L + V +       K  +E+ P+    E +   +G    EC +CL E+E  E  R MP C H FHANCI++WL  + +CPVCR  + ++  +S
Sbjct:    2 TIFTRDFSHRILACVLLPLFLFQCLPYVTCQQGSESAGRNGKSKES--SIIGIVLLSLFLLLLVVYCLNYGCCIEENETGGHEVLHSRVRRG----IDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDS 172          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: PJA2_RAT (E3 ubiquitin-protein ligase Praja2 OS=Rattus norvegicus GN=Pja2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 628
            PPASK S++ +P   V E +  A+G E  C +C  EY   ++A E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  605 PPASKESIDGLPETLVLE-DHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 678          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: PJA2_PONAB (E3 ubiquitin-protein ligase Praja2 OS=Pongo abelii GN=PJA2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 628
            PPASK S++ +P   V E +  A+G E  C +C  EY   ++A E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  606 PPASKESIDGLPETLVLE-DHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: PJA2_MOUSE (E3 ubiquitin-protein ligase Praja2 OS=Mus musculus GN=Pja2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 628
            PPASK S++ +P   V E +  A+G E  C +C  EY   ++A E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  605 PPASKESIDGLPETLVLE-DHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 678          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: PJA2_HUMAN (E3 ubiquitin-protein ligase Praja2 OS=Homo sapiens GN=PJA2 PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 628
            PPASK S++ +P   V E +  A+G E  C +C  EY   ++A E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  606 PPASKESIDGLPETLVLE-DHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RNF38_MOUSE (RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 44/157 (28.03%), Postives = 76/157 (48.41%), Query Frame = 2
Query:  179 HRDMSLCLPFVLGFTSSVSTGESSQNSQNPDGETPHTNRSSSERIILVNPLNQG--------MVVIEGTSSLETLLRNFVGKDGQPPA---SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            H+++S  +P+   F     TG S   SQ P    P+ + S    ++ + P+           + V +G       L N   + G+      +KA +E +PS +   S  ++    CVVC+ ++E  ++ R +PC H+FHA C++KWL    +CP+CR
Sbjct:  353 HQEVSFGVPYP-PFMPRRLTGRSRYRSQQPMPPPPY-HPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPSNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICR 507          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RNF38_HUMAN (RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 43/157 (27.39%), Postives = 76/157 (48.41%), Query Frame = 2
Query:  179 HRDMSLCLPFVLGFTSSVSTGESSQNSQNPDGETPHTNRSSSERIILVNPLNQG--------MVVIEGTSSLETLLRNFVGKDGQPPA---SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            H+++S  +P+   F     TG S   SQ P    P+ + S    ++ + P+           + V +G       L N   + G+      +KA +E +PS +   +  ++    CVVC+ ++E  ++ R +PC H+FHA C++KWL    +CP+CR
Sbjct:  350 HQEVSFGVPYP-PFMPRRLTGRSRYRSQQPIPPPPY-HPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 504          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGG--ECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKM----PVEEEESGYKRYE 664
            P ASK ++  +P  ++ +S+E   GG  EC VC E  E G+  R +PCKH+FH  CI  WL    SCP+CRY++    PV EE   +++ E
Sbjct:   44 PEASKRAILELPVHEIVKSDE---GGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYEELRRFRQDE 131          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RNF44_HUMAN (RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 24/66 (36.36%), Postives = 40/66 (60.61%), Query Frame = 2
Query:  419 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            +KA +E +PS +      ++    CVVC  ++E  ++ R +PC H+FH  C++KWL    +CP+CR
Sbjct:  356 TKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICR 421          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RNF44_DANRE (RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 2
Query:  419 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            +KA +E +PS +      ++    CVVC  ++E  ++ R +PC H+FHA C++KWL    +CP+CR
Sbjct:  372 TKADIEQLPSYRFNLENHQSEQTLCVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICR 437          
The following BLAST results are available for this feature:
BLAST of CN185641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ATL4D_ARATH5.703e-1228.81Putative RING-H2 finger protein ATL4D OS=Arabidops... [more]
PJA2_RAT9.728e-1244.00E3 ubiquitin-protein ligase Praja2 OS=Rattus norve... [more]
PJA2_PONAB9.728e-1244.00E3 ubiquitin-protein ligase Praja2 OS=Pongo abelii... [more]
PJA2_MOUSE9.728e-1244.00E3 ubiquitin-protein ligase Praja2 OS=Mus musculus... [more]
PJA2_HUMAN9.728e-1244.00E3 ubiquitin-protein ligase Praja2 OS=Homo sapiens... [more]
RNF38_MOUSE2.830e-1128.03RING finger protein 38 OS=Mus musculus GN=Rnf38 PE... [more]
RNF38_HUMAN2.830e-1127.39RING finger protein 38 OS=Homo sapiens GN=RNF38 PE... [more]
RN181_DROME2.830e-1141.76E3 ubiquitin-protein ligase CG7694 OS=Drosophila m... [more]
RNF44_HUMAN4.828e-1136.36RING finger protein 44 OS=Homo sapiens GN=RNF44 PE... [more]
RNF44_DANRE4.828e-1137.88RING finger protein 44 OS=Danio rerio GN=rnf44 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185641 ID=CN185641; Name=CN185641; organism=Citrus sinensis; type=EST; length=692bp
CGTCTTAAAGGCAGATTCTTCTTCTCCTTTTTTTTTTCCTCTTAAAAATC
GGATTGTTGATCACCCTAGTACAGATCTCTCAGAAAAGATTTGATCTTTC
TGTCAAAATTTCATTCTTTCGATGTCCTCTGAAGCTGAAGCTACTGATGT
CTCATCGCTGTTTGAGAGACTGTTAAGTCACAGAGACATGTCTTTGTGTC
TACCCTTTGTCTTAGGCTTCACAAGCAGCGTCTCCACAGGTGAAAGTTCC
CAGAATTCTCAGAACCCGGATGGGGAAACCCCTCATACAAACAGAAGTTC
AAGCGAAAGAATCATTCTCGTCAATCCTCTCAATCAGGGCATGGTAGTGA
TTGAAGGGACTTCAAGTTTAGAGACTCTGCTGAGAAATTTCGTTGGTAAA
GATGGCCAGCCTCCTGCTTCAAAGGCATCGGTTGAGGCCATGCCAAGTAT
CAAAGTCGGTGAAAGCGAAGAGGAAGCTCTTGGTGGTGAGTGTGTCGTGT
GTTTAGAGGAGTATGAGGTTGGGGAGGTGGCGAGAGAGATGCCATGTAAG
CACAAGTTTCATGCAAACTGTATAGAGAAGTGGCTTGGGATTCAGGGGTC
GTGTCCTGTTTGTAGATACAAGATGCCTGTTGAAGAAGAGGAAAGTGGCT
ACAAAAGATATGAGCGAAGGATAGAAATTTGGGTTAGTTTTT
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