CN185641

Overview
NameCN185641
Unique NameCN185641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13756 contig Csv1_Contig13756:8..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 2 
Query:  422 KASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWLGIQGSCPVCRYKMPVEE 637
            ++ +E++P  + G       G EC VCL  +E  EV R +P CKH FH  C++ WL    +CP+CRY++  E+
Sbjct:  123 RSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED 195
The following BLAST results are available for this feature:
BLAST of CN185641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ATL5C_ARATH6.305e-1138.36RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185641 ID=CN185641; Name=CN185641; organism=Citrus sinensis; type=EST; length=692bp
CGTCTTAAAGGCAGATTCTTCTTCTCCTTTTTTTTTTCCTCTTAAAAATC
GGATTGTTGATCACCCTAGTACAGATCTCTCAGAAAAGATTTGATCTTTC
TGTCAAAATTTCATTCTTTCGATGTCCTCTGAAGCTGAAGCTACTGATGT
CTCATCGCTGTTTGAGAGACTGTTAAGTCACAGAGACATGTCTTTGTGTC
TACCCTTTGTCTTAGGCTTCACAAGCAGCGTCTCCACAGGTGAAAGTTCC
CAGAATTCTCAGAACCCGGATGGGGAAACCCCTCATACAAACAGAAGTTC
AAGCGAAAGAATCATTCTCGTCAATCCTCTCAATCAGGGCATGGTAGTGA
TTGAAGGGACTTCAAGTTTAGAGACTCTGCTGAGAAATTTCGTTGGTAAA
GATGGCCAGCCTCCTGCTTCAAAGGCATCGGTTGAGGCCATGCCAAGTAT
CAAAGTCGGTGAAAGCGAAGAGGAAGCTCTTGGTGGTGAGTGTGTCGTGT
GTTTAGAGGAGTATGAGGTTGGGGAGGTGGCGAGAGAGATGCCATGTAAG
CACAAGTTTCATGCAAACTGTATAGAGAAGTGGCTTGGGATTCAGGGGTC
GTGTCCTGTTTGTAGATACAAGATGCCTGTTGAAGAAGAGGAAAGTGGCT
ACAAAAGATATGAGCGAAGGATAGAAATTTGGGTTAGTTTTT
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