CN185638

Overview
NameCN185638
Unique NameCN185638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3988 contig Csv1_Contig3988:44..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185638 vs. ExPASy Swiss-Prot
Match: SCM2A_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 47/155 (30.32%), Postives = 76/155 (49.03%), Query Frame = -3
Query:  311 VYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVL----TDGMQDSFLASFLLGWGITIGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 760
            +Y ++  +TRLA      +K G  Q+ G+ D  K  LK++G++  Y+G+  + +GII Y G+   +Y++LK   L    T+            G   +    LASYP+  +R RM    S E     S    F++I+K EG   L++G   N L+
Sbjct:  298 IYPMEVLKTRLA-----LRKTG--QYKGISDCAKHILKTEGMSAFYKGYVPNMLGIIPYAGIDLAVYETLKNTWLQRYGTENADPGVFVLLACGTVSSTCGQLASYPLALIRTRMQAQASVEGSSQVSMTGLFKQIMKTEGPTGLYRGLTPNFLK 445          
BLAST of CN185638 vs. ExPASy Swiss-Prot
Match: S2542_DANRE (Solute carrier family 25 member 42 OS=Danio rerio GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.941e-11
Identity = 46/149 (30.87%), Postives = 71/149 (47.65%), Query Frame = -3
Query:  320 YSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLLGWGITIG--AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEG-TKSLFKGAGAN 757
            Y LD  R R+A   K         ++ ++DV+ +  + +G+  LYRGF+ + +G++ Y GL F  Y++LK        +        L +G   G     ASYP+D VRRRM         Y + L   +EI+  EG  + L+KG   N
Sbjct:  152 YPLDMVRARMAVTPK-------EMYSNIMDVFVRISREEGLKTLYRGFTPTILGVVPYAGLSFFTYETLKKTHAEKTGRAHPFPYERLVFGACAGLIGQSASYPLDVVRRRMQTAGVTGHTYSTVLGTMREIVAEEGIVRGLYKGLSMN 293          
BLAST of CN185638 vs. ExPASy Swiss-Prot
Match: MCFJ_DICDI (Mitochondrial substrate carrier family protein J OS=Dictyostelium discoideum GN=mcfJ PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.148e-11
Identity = 50/157 (31.85%), Postives = 72/157 (45.86%), Query Frame = -3
Query:  311 VYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVL---TDGMQDSFLASFLLGWGITIGAGLAS---YPIDTVRRRMMMT-SGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 760
            ++ LD  RTRL             Q+NG  D +KK ++ +G   LY+GF  S  G +  R +YFG Y+ +K   L   +D   D    + + G    I   LAS    P D   + + +  S    KYK     F++I    G K L+KG GA I+R
Sbjct:   46 MFPLDVIRTRLQVQGSQNVIQSFPQYNGTFDGFKKLIRLEGKRALYKGFLTSECGYLCSRAIYFGSYEFVKQGFLKGRSDSDSDLLFVTTISG---AISEALASVIWVPFDVATQSVQIQGSLSKPKYKGGSDVFKKIYGERGIKGLYKGFGATIIR 199          
BLAST of CN185638 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 45/155 (29.03%), Postives = 74/155 (47.74%), Query Frame = -3
Query:  311 VYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVL----TDGMQDSFLASFLLGWGITIGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 760
            +Y ++  +TRLA        G   Q++G+ D  KK ++ +G+   Y+G+  + +GII Y G+   +Y++LK   L    TD      L     G   +    LASYP+  +R RM    S E     +    F++I+  EG   L++G   N L+
Sbjct:  305 IYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQREGVRAFYKGYIPNILGIIPYAGIDLAIYETLKTFWLQNYATDSANPGVLVLLGCGTASSTCGQLASYPLALIRTRMQAQASIEGAPQLNMGGLFRKIVAKEGFFGLYRGIAPNFLK 452          
BLAST of CN185638 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 45/155 (29.03%), Postives = 74/155 (47.74%), Query Frame = -3
Query:  311 VYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVL----TDGMQDSFLASFLLGWGITIGAGLASYPIDTVRRRMMM-TSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 760
            +Y ++  +TR+A      +K G  Q+ G++D  KK L  +G++  Y+G+  + +GII Y G+   +Y++LK   L    T             G   +    LASYP+  VR RM    S E     +    F+ I+K EG   L++G   N ++
Sbjct:  342 IYPMEVLKTRMA-----LRKTG--QYQGMLDCGKKILLKEGVSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTISSTCGQLASYPLALVRTRMQAEASVEGAPQMTMSKLFKHIVKTEGAFGLYRGLAPNFMK 489          
BLAST of CN185638 vs. ExPASy Swiss-Prot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G OS=Dictyostelium discoideum GN=mcfG PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 43/156 (27.56%), Postives = 75/156 (48.08%), Query Frame = -3
Query:  311 FFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVV--LTDGMQDSFLASFLLGWGITIG--AGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 766
            F  + LD  + RL   +      G   ++G +D  KKT+  +G AGLY+G +   VG+ +   + F  Y   K ++  L+D   ++     L   G   G   G    P+D  + +M +  G+  +YKS+    ++I K  G + +F+G GA ++R
Sbjct:   29 FTGHPLDTIKVRLQTQSV-----GNPIYSGTMDCLKKTISQEGFAGLYKGVASPLVGLSIMNSVMFLAYGQSKTLIQKLSDNPNEALDLKGLTAAGALAGIAIGFVDAPVDLFKSQMQVQQGDKNQYKSTADCAKQIWKVGGVRGVFQGLGATLVR 179          
The following BLAST results are available for this feature:
BLAST of CN185638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SCM2A_DANRE3.018e-1130.32Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_DANRE3.941e-1130.87Solute carrier family 25 member 42 OS=Danio rerio ... [more]
MCFJ_DICDI5.148e-1131.85Mitochondrial substrate carrier family protein J O... [more]
SCMC1_XENTR6.723e-1129.03Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENTR8.781e-1129.03Calcium-binding mitochondrial carrier protein SCaM... [more]
MCFG_DICDI8.781e-1127.56Mitochondrial substrate carrier family protein G O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185638 ID=CN185638; Name=CN185638; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTAAGTGAAACTATTTAAATTATTATCACAACACTTNGAGTCTAC
CGCTCAAGCACAAAAACACTCAAATTCAAACAGTTCTTTGACGACTATAA
TCTTTTCTTTTATCAAATCCCTAAAAACCGGATAAATATTAATAACACTA
TCGATCATCCAAAATTATTCAAACTTGAGAAGAGCACCTATAGAATTTTC
ACCAACATCTTGTACAAGTATTAACCGCCGCCACCGGATCCGTATTTCTT
GCCAAATAGAACCAGCTGCAGCTTGTCATAACCGGCAAGCACACCAGCAC
CTGCCACAGCACGCAGAATGTTTGCACCAGCACCTTTGAAGAGTGATTTA
GTGCCTTCATTCTTTATAATTTCCTGGAATGCATGCAAAGAGCTCTTGTA
CTTCACAGCTTCTCCAGAGGTCATCATCATCCTTCTACGCACTGTATCAA
TTGGGTAAGAAGCCAAACCAGCACCAATTGTGATTCCCCAGCCAAGTAAG
AAGCTAGCCAAGAAACTATCCTGCATCCCATCAGTCAACACCACAGGTTT
CAGAGAATCATACATTCCAAAGTAGAGCCCACGATACACTATAATTCCAA
CACATGAGATGCTGAATCCACGGTAGAGCCCAGCAATGCCATCAGATTTC
AGAGTCTTCTTGTAGACATCAATCAAACCATTAAACTGCCTTTCCCCACC
CTTTTTAGCTGCCTTAGCATCATTTGCCAAACGTGTTCTTGCATAGTCAA
GCGAATACACAAAAAAGAAGCGATGAAGCACCAGCAGCCCCACCAGATGC
CAAGTTCCCAGCAAACCACTTCCAGTAAGCATCTCTGTCTTTCTTG
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