DC887977

Overview
NameDC887977
Unique NameDC887977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.146e-19
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = -3
Query:  182 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 505
            V KV Y GL  HPGHE+   Q    G ++SF        K  VE   YF++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++D+ +AL
Sbjct:  270 VSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELTDENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEAL 377          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CGL_MACFA (Cystathionine gamma-lyase OS=Macaca fascicularis GN=CTH PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.146e-19
Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = -3
Query:  149 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL*CITHD 511
            P V+KV Y GLP HP HEL   Q  G   +++F + G+L  ++  ++  K F++  S G  +SL+ +P  M+HAS+P   R   G+++ L+R+SVG+ED  DL+ DLD+AL+       +HD
Sbjct:  284 PGVEKVIYPGLPSHPQHELAKRQCTGCTGMITFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLVELPAIMTHASVPKNDRDVLGISDTLIRLSVGLEDEKDLLEDLDQALKAAHPPSGSHD 405          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METB_HELPJ (Cystathionine gamma-synthase OS=Helicobacter pylori J99 GN=metB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.955e-19
Identity = 48/109 (44.04%), Postives = 69/109 (63.30%), Query Frame = -3
Query:  185 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 511
            P+V++V Y GLP HP HEL  +Q +G   + SF   + + +   VE+ K F +  S G V+SL+ +P  M+HA IP   R+A G+ + LVR+SVGIE   DL+ DLD+A
Sbjct:  267 PKVERVYYPGLPTHPNHELAKAQMRGFSGMFSFTLKNDSEAVAFVESLKLFILGESLGGVESLVGIPALMTHACIPKAQREAAGIRDGLVRLSVGIEHEQDLLEDLDQA 375          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CGL_PIG (Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.955e-19
Identity = 47/112 (41.96%), Postives = 72/112 (64.29%), Query Frame = -3
Query:  179 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 511
            P V+KV Y GLP HP HEL   Q  G   ++SF + GSL  ++  +++ K F++  S G  +SL  +P  M+H+S+P   R+  G+ + L+R+SVG+ED  DL+ DLD+AL+
Sbjct:  284 PLVEKVIYPGLPSHPQHELAKRQCTGCPGMISFYIKGSLHHAETFLKSLKLFTLAESLGGYESLAELPAIMTHSSVPKSDREVLGIRDTLIRLSVGLEDKQDLMDDLDQALK 395          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METB_HELPY (Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.553e-19
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = -3
Query:  185 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 511
            P+V++V Y GLP HP +EL   Q +G   +LSF   + + +   VE+ K F +  S G V+SL+ +P FM+HA IP   R+A G+ + LVR+SVGIE   DL+ DL++A
Sbjct:  267 PKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQA 375          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CGL_RAT (Cystathionine gamma-lyase OS=Rattus norvegicus GN=Cth PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.553e-19
Identity = 47/112 (41.96%), Postives = 72/112 (64.29%), Query Frame = -3
Query:  179 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 511
            PRV+KV Y GLP HP HEL   Q  G   ++SF + G+L  ++  ++  K F++  S G  +SL  +P  M+HAS+P + R   G+++ L+R+SVG+ED  DL+ DL +AL+
Sbjct:  283 PRVEKVIYPGLPSHPQHELAKRQCTGCPGMVSFYIKGTLQHAQVFLKNIKLFALAESLGGYESLAELPAIMTHASVPEKDRATLGISDTLIRLSVGLEDEKDLLEDLGQALK 394          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.355e-19
Identity = 47/108 (43.52%), Postives = 68/108 (62.96%), Query Frame = -3
Query:  182 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 505
            V KV Y GL  H GHE+   Q    G ++SF        K+ VE  +YF++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++DL +AL
Sbjct:  270 VSKVYYPGLVNHEGHEIAKKQMTAFGGMISFELTDENAVKNFVENLRYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEALEDLLTDLKEAL 377          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METC_COXBU (Cystathionine beta-lyase OS=Coxiella burnetii GN=metC PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.687e-18
Identity = 49/111 (44.14%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  182 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 511
            P+VK+V Y GLP HP H +   Q +  G ++S  L   L  +K V+E  + F++  S G V+SLI  P  M+HASIP   RQ  G+T+  +R+SVGIE + DL  DL+ AL
Sbjct:  277 PKVKRVYYPGLPSHPQHSIAKKQMRYFGGMISVELKCDLNETKKVLERCQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGIEAITDLRHDLEAAL 387          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CGL_HUMAN (Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 8.214e-18
Identity = 46/112 (41.07%), Postives = 69/112 (61.61%), Query Frame = -3
Query:  179 PRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 511
            P V+KV Y GLP HP HEL   Q  G  G V  ++ G+L  ++  ++  K F++  S G  +SL  +P  M+HAS+    R   G+++ L+R+SVG+ED  DL+ DLD+AL+
Sbjct:  284 PWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALK 395          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CYS3_YEAST (Cystathionine gamma-lyase OS=Saccharomyces cerevisiae GN=CYS3 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.401e-17
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = -3
Query:  179 VKKVNYAGLPEHPGHELHYSQAKGA--GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 505
            V  VNY GL  HP +++   Q + A  G ++SF + G    +     +T+ F++  S G ++SL+ +P  M+H  IP E R+A G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct:  279 VVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALK 390          
The following BLAST results are available for this feature:
BLAST of DC887977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
METC_LACLA1.146e-1943.52Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
CGL_MACFA1.146e-1939.34Cystathionine gamma-lyase OS=Macaca fascicularis G... [more]
METB_HELPJ1.955e-1944.04Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
CGL_PIG1.955e-1941.96Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=... [more]
METB_HELPY2.553e-1944.04Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
CGL_RAT2.553e-1941.96Cystathionine gamma-lyase OS=Rattus norvegicus GN=... [more]
METC_LACLC4.355e-1943.52Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_COXBU3.687e-1844.14Cystathionine beta-lyase OS=Coxiella burnetii GN=m... [more]
CGL_HUMAN8.214e-1841.07Cystathionine gamma-lyase OS=Homo sapiens GN=CTH P... [more]
CYS3_YEAST1.401e-1740.18Cystathionine gamma-lyase OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionDC887977 EIC Citrus sinensis cDNA clone EIC1203 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887977 ID=DC887977; Name=DC887977; organism=Citrus sinensis; type=EST; length=513bp
GAAAGTTTTGGCTTTCCATTTCCATGGACAATCGGAATATCTAGACTGAG
ATCGTCCATGCACCAGAAAAAGATATATATGAAATCAAATCTGCCAATTT
GGAGAGCGCTGGGCCTAAAACATTATCCATAATACCGAATGAAGGAGAAT
CATGAGTAATACACTACAGAGGCCCAGTCCTGAGTGCTTTGTCTAAATCA
GAAATCAAGTCATTTACATCTTCAATTCCCACAGATATACGGACAAGATC
TTCAGTTAGACCTCTTGCTTGGCGCACTTCAACTGGTATGCTGGCATGGG
ACATAAAGCAGGGCATGCTTATGAGTGACTTTACACTCCCAAAGCTGACC
GTAATGCTGAAGTACTTTGTAGTCTCAACAACATGCTTTGAGAGTGCTAG
TGACCCTGTCAGAAAGCTAAGTACAGAGCCAGCCCCCTTTGCCTGAGAAT
AGTGTAACTCATGTCCAGGATGCTCAGGGAGACCTGCATAGTTAACTTTC
TTCACTCTCGGAT
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