DC887977

Overview
NameDC887977
Unique NameDC887977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METB_ECOLI (Cystathionine gamma-synthase OS=Escherichia coli (strain K12) GN=metB PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.324e-17
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = -3
Query:  179 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 511
            P VKK+ +  LPE+ GHE+   Q KG G++LSF L G     +  +     F++  S G V+SLIS    M+HA +  E R A G++E L+RIS GIED  DLI+DL+   R
Sbjct:  270 PLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFR 381          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.451e-16
Identity = 42/111 (37.84%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  182 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 511
            P +++V YAGLP HP HEL   Q  G G+V+SF + G    +   ++ T+  SIT + G  K+ I+ P   SH  +  E R   G+ + L+R++VG+ED++DL +D+ + L
Sbjct:  290 PGIERVYYAGLPSHPQHELARRQQSGFGAVVSFDVKGGRDAAWRFIDATRMVSITTNLGDTKTTIAHPATTSHGRLSPEDRARAGIGDSLIRVAVGLEDLDDLKADMARGL 400          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METB_MYCLE (Cystathionine gamma-synthase OS=Mycobacterium leprae GN=metB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.004e-15
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = -3
Query:  182 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS--FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 511
            P V  V Y GLP HPGHE+   Q +G G ++S     G LA ++ +   TK F++  S G V+SLI  P  M+HAS      +   + +DLVR+SVGIEDV DL+ DL +AL
Sbjct:  280 PSVSAVLYPGLPSHPGHEVAARQMRGFGGMVSLRMRAGRLA-AQDLCARTKVFTLAESLGGVESLIEQPSAMTHASTTGSQLE---VPDDLVRLSVGIEDVGDLLCDLKQAL 387          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.237e-15
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  182 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 511
            P+V  V Y GLP HP HEL   Q  G G V+SF + G +  +   V++ K   I  SFG  +S++  P  MS+  +P E R   G+ ++LVR S G+ED  D+ +D+ +AL
Sbjct:  450 PKVSHVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFGVEDFEDVKADILQAL 560          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METB_MYCTU (Cystathionine gamma-synthase OS=Mycobacterium tuberculosis GN=metB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  182 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 511
            P V  V Y GLP HPGHE+   Q +G G ++S  +      ++ +   T+ F +  S G V+SLI  P  M+HAS      +   + +DLVR+SVGIED+ DL+ DL++AL
Sbjct:  280 PSVSSVLYPGLPSHPGHEIAARQMRGFGGMVSVRMRAGRRAAQDLCAKTRVFILAESLGGVESLIEHPSAMTHASTAGSQLE---VPDDLVRLSVGIEDIADLLGDLEQAL 387          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: METB_MYCBO (Cystathionine gamma-synthase OS=Mycobacterium bovis GN=metB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  182 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 511
            P V  V Y GLP HPGHE+   Q +G G ++S  +      ++ +   T+ F +  S G V+SLI  P  M+HAS      +   + +DLVR+SVGIED+ DL+ DL++AL
Sbjct:  280 PSVSSVLYPGLPSHPGHEIAARQMRGFGGMVSVRMRAGRRAAQDLCAKTRVFILAESLGGVESLIEHPSAMTHASTAGSQLE---VPDDLVRLSVGIEDIADLLGDLEQAL 387          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: MEGL_PSEPU (Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = -3
Query:  179 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 511
            P+V+ ++Y GL   P + L   Q    G +++F L G +   +  +   + FS  VS G  +SL   P  M+H+S   E R   G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct:  284 PQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CYSD_SCHPO (O-acetylhomoserine (thiol)-lyase OS=Schizosaccharomyces pombe GN=SPBC428.11 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.092e-13
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = -3
Query:  182 PRVKKVNYAGLPEHPGHELHYSQAK-GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 511
            P+V  V+Y GL  H  H+L     K G G+VLSF   G    S+ VV   K  S   + G  K+L+  P + +H  +  E + + G+T+DL+R++VGIE ++D+I+D  +AL
Sbjct:  315 PKVNWVSYPGLESHVSHKLAKKYLKNGYGAVLSFGAKGGPDQSRKVVNALKLASQLANVGDAKTLVIAPAYTTHLQLTDEEQISAGVTKDLIRVAVGIEHIDDIIADFAQAL 426          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: CYSD_EMENI (O-acetylhomoserine (thiol)-lyase OS=Emericella nidulans GN=cysD PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.500e-11
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = -3
Query:  185 VKKVNYAGLPEHPGHELHYSQAK-GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 505
            V  V+Y GL EH  HE+     K G G VLSF + G  A+   VV+  K  S   + G  K+L   P   +H  +  + R   G+TED +RISVG E ++D+I+D +++
Sbjct:  318 VSWVSYVGLEEHSSHEVAKKYLKRGFGGVLSFGVKGEAAVGSQVVDNFKLISNLANVGDSKTLAIHPWSTTHEQLTDQERIDSGVTEDAIRISVGTEHIDDIIADFEQS 426          
BLAST of DC887977 vs. ExPASy Swiss-Prot
Match: MET17_KLULA (Protein MET17 OS=Kluyveromyces lactis GN=MET17 PE=3 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 5.701e-11
Identity = 43/124 (34.68%), Postives = 62/124 (50.00%), Query Frame = -3
Query:  176 PRVKKVNYAGLPEHPGHELHYSQAK-GAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 511
            P V  V+Y GLP H  HE      + G G VLSF    L           A    VV+  K  S   + G  K+L+  P F +H  +  E + A G+T+DL+R+SVG E ++D+I+D + +  T
Sbjct:  313 PYVSWVSYPGLPSHSHHENAKKYLENGFGGVLSFGVKDLPNASEESDPFKASGAQVVDNLKLASNLANVGDSKTLVIAPYFTTHQQLTDEEKLASGVTKDLIRVSVGTEFIDDIIADFEASFAT 436          
The following BLAST results are available for this feature:
BLAST of DC887977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
METB_ECOLI5.324e-1743.75Cystathionine gamma-synthase OS=Escherichia coli (... [more]
METZ_PSEAE3.451e-1637.84O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
METB_MYCLE1.004e-1544.64Cystathionine gamma-synthase OS=Mycobacterium lepr... [more]
METB_ARATH2.237e-1539.64Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
METB_MYCTU6.508e-1540.54Cystathionine gamma-synthase OS=Mycobacterium tube... [more]
METB_MYCBO6.508e-1540.54Cystathionine gamma-synthase OS=Mycobacterium bovi... [more]
MEGL_PSEPU2.473e-1435.71Methionine gamma-lyase OS=Pseudomonas putida GN=md... [more]
CYSD_SCHPO6.092e-1337.50O-acetylhomoserine (thiol)-lyase OS=Schizosaccharo... [more]
CYSD_EMENI1.500e-1137.61O-acetylhomoserine (thiol)-lyase OS=Emericella nid... [more]
MET17_KLULA5.701e-1134.68Protein MET17 OS=Kluyveromyces lactis GN=MET17 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887977 EIC Citrus sinensis cDNA clone EIC1203 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887977 ID=DC887977; Name=DC887977; organism=Citrus sinensis; type=EST; length=513bp
GAAAGTTTTGGCTTTCCATTTCCATGGACAATCGGAATATCTAGACTGAG
ATCGTCCATGCACCAGAAAAAGATATATATGAAATCAAATCTGCCAATTT
GGAGAGCGCTGGGCCTAAAACATTATCCATAATACCGAATGAAGGAGAAT
CATGAGTAATACACTACAGAGGCCCAGTCCTGAGTGCTTTGTCTAAATCA
GAAATCAAGTCATTTACATCTTCAATTCCCACAGATATACGGACAAGATC
TTCAGTTAGACCTCTTGCTTGGCGCACTTCAACTGGTATGCTGGCATGGG
ACATAAAGCAGGGCATGCTTATGAGTGACTTTACACTCCCAAAGCTGACC
GTAATGCTGAAGTACTTTGTAGTCTCAACAACATGCTTTGAGAGTGCTAG
TGACCCTGTCAGAAAGCTAAGTACAGAGCCAGCCCCCTTTGCCTGAGAAT
AGTGTAACTCATGTCCAGGATGCTCAGGGAGACCTGCATAGTTAACTTTC
TTCACTCTCGGAT
back to top