CN185629

Overview
NameCN185629
Unique NameCN185629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:348..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 9.193e-59
Identity = 103/157 (65.61%), Postives = 128/157 (81.53%), Query Frame = -3 
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ DTKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 9.193e-59
Identity = 103/157 (65.61%), Postives = 128/157 (81.53%), Query Frame = -3 
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ DTKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 9.193e-59
Identity = 103/157 (65.61%), Postives = 128/157 (81.53%), Query Frame = -3 
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ DTKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 9.193e-59
Identity = 103/157 (65.61%), Postives = 128/157 (81.53%), Query Frame = -3 
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ DTKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 9.193e-59
Identity = 103/157 (65.61%), Postives = 128/157 (81.53%), Query Frame = -3 
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ DTKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 9.193e-59
Identity = 103/157 (65.61%), Postives = 128/157 (81.53%), Query Frame = -3 
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ DTKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 9.193e-59
Identity = 103/157 (65.61%), Postives = 128/157 (81.53%), Query Frame = -3 
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ DTKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 226.098 bits (575), Expect = 1.568e-58
Identity = 103/157 (65.61%), Postives = 127/157 (80.89%), Query Frame = -3 
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ DTKG F +H +  EEAK+KLCKVR    G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLVYDTKGRFAVHRITSEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.568e-58
Identity = 103/157 (65.61%), Postives = 128/157 (81.53%), Query Frame = -3 
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ DTKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 2.675e-58
Identity = 103/157 (65.61%), Postives = 127/157 (80.89%), Query Frame = -3 
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ DTKG F +H +  EEAK+KLCKVR    G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
The following BLAST results are available for this feature:
BLAST of CN185629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4X_RAT9.193e-5965.6140S ribosomal protein S4, X isoform OS=Rattus norv... [more]
RS4X_MOUSE9.193e-5965.6140S ribosomal protein S4, X isoform OS=Mus musculu... [more]
RS4X_MESAU9.193e-5965.6140S ribosomal protein S4, X isoform OS=Mesocricetu... [more]
RS4X_MACFU9.193e-5965.6140S ribosomal protein S4, X isoform OS=Macaca fusc... [more]
RS4X_HUMAN9.193e-5965.6140S ribosomal protein S4, X isoform OS=Homo sapien... [more]
RS4X_FELCA9.193e-5965.6140S ribosomal protein S4, X isoform OS=Felis catus... [more]
RS4X_CERAE9.193e-5965.6140S ribosomal protein S4, X isoform OS=Cercopithec... [more]
RS4_XENLA1.568e-5865.6140S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4_CHICK1.568e-5865.6140S ribosomal protein S4 OS=Gallus gallus GN=RPS4 ... [more]
RS4_XENTR2.675e-5865.6140S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185629 ID=CN185629; Name=CN185629; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTTTTTTTTTTTCGATAAAGAGATACATGAACTCAGTTTAGATCG
CTGAAAATAACATCCACCAAATAGTAGCTCATTTAAAAAAGGACAAAGCA
GGTTCAAAATTGTGCTGATAAAAATAAAAATAAAAATAAAGATTCATTTT
TGCATCGGTCCTACTTCAGCTTTAGAGAGTGCCAATCAGCTCTAATTCAA
CAAGAAAAAACAAAGCAGCAAAATGCATCCAAATTCATTGTAAAAGCTTA
AGCAGCAGCCTGGGCAGCCTGTCTCTTCCTAGCTTCCTCAATGATGGACA
ACTTAATACCCTTGCCCTTAGGAAGTGACACCCATGGTTTTGAACCCTTC
CCGATGGTGAACACATTGCCTAGACGAGTTGCAAACTCATGACCAAGGGC
ATCTTGAATATGGATGGTCTCAAAACTTCCCTTATGCTTTTCCCTGTTCT
TGATGATTCCAACTCGACCTCTGTTTCTACCCCCAGTGACCATGACAATA
TTCCCAACATCAAACTTGATGAAGTCAGTGATCTTGTTCTCTTCTAAGTC
AAGTTTGATGGTATCATTGGCTTTGATGAGTGGGTCAGGGTAGCGGATGG
TACGCCCATCATAGGTGTTGATGTATGGGATACCTTTCTGGCCAAACTGG
ACTGATCTAACTTTGCAAAGCTTGAATTTTGCCTCCTCATCTCTGAGGGA
ATGGAGACCGAAGCCACCCTTGGTGTCCTAAAGGAGACGGAAGT
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