CN185629

Overview
NameCN185629
Unique NameCN185629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:348..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.984e-53
Identity = 97/157 (61.78%), Postives = 122/157 (77.71%), Query Frame = -3
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ D KG F +H + DEEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDP IK NDT+K+DL   KITDFIKFD G +V VTGGRN GR+G I ++E+H G F+ +HI+D+L + F TRL NVF IG+  KP++SLPKGKGIKLSI EE  +R
Sbjct:   99 FRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRR 255          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.984e-53
Identity = 95/157 (60.51%), Postives = 122/157 (77.71%), Query Frame = -3
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ +TKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KIT FIKFD GN+ MV  G N GRVG+I NRE+H GS + +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   99 FRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.591e-53
Identity = 95/157 (60.51%), Postives = 125/157 (79.62%), Query Frame = -3
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL+ D KG F +H +  EEAK+KLCKV+ V  G K +P++ T+DGRTIRYPDPLIK ND+++LD+  +KI DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKG+K ++SLP+GKG++L+I EE  KR
Sbjct:   99 FRLIYDVKGRFTVHRITPEEAKYKLCKVKRVSTGPKNVPFLVTHDGRTIRYPDPLIKVNDSVQLDIATSKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGVRLTIAEERDKR 255          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.679e-52
Identity = 101/158 (63.92%), Postives = 122/158 (77.22%), Query Frame = -3
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLPKGKGIKLSIIEEARKR 742
            FRL  D KG F +H +  EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL   KI  FIKFD G +VMVTGGRN GRVG+I +REK +G F+ +HI+DAL + F TRL NVF IG +  KPWVSLPKGKGIKLSI EE  +R
Sbjct:   99 FRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISEERDRR 256          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 2.124e-47
Identity = 89/153 (58.17%), Postives = 113/153 (73.86%), Query Frame = -3
Query:  284 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEE 742
            FRLL D KG F L  +  EEAKFKL +V  V+ G +GIPY++T DGRTIRYPDP I  +DTIK+D+E  KIT FI F+V N+ M+ GG N GRVG + +REKH GSF+ +H+ D  GH+FATRL NVF IGK S+ +VSLP GKG++ S ++E
Sbjct:   99 FRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDE 251          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.181e-47
Identity = 92/157 (58.60%), Postives = 116/157 (73.89%), Query Frame = -3
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FR+L DTKG + +H ++  EA FKLCKV+SV+   KG+P + T DGRTIRYPDP +K NDTI  ++   KITD +KF+ GN+  VTGGRN GRVGII +RE+  G+ + IHI+D+ GH FATR+ NVF IGKG+K  VSLP G GI+LSI EE  KR
Sbjct:   98 FRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKR 254          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.971e-41
Identity = 81/157 (51.59%), Postives = 111/157 (70.70%), Query Frame = -3
Query:  272 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            FR+L DTKG F L SL  EEAK+KL KV +   G   IPYI T+D RTIR+P+P IK  DT+K DL  NKI +F   + GN+  +  G N GRVGII++ EKH+GSF+  H++DA G+ FATRLGN+F +G+G K ++ LP G G++ +I+EE +++
Sbjct:  100 FRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKLYIELPSGDGVRETILEERKRK 256          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.129e-40
Identity = 75/115 (65.22%), Postives = 93/115 (80.87%), Query Frame = -3
Query:  398 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA 742
            FRL+ DTKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA
Sbjct:   80 FRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 53/154 (34.42%), Postives = 87/154 (56.49%), Query Frame = -3
Query:  284 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKP-WVSLPKGKGIKLSIIEE 742
            FR+L +    F LH +  EEA ++L KV   ++  +GIPYI +  G +IR+ DP I    TIK+  E +K+ ++I      ++ V+ G+ RGRVG+I N    +G      + D  G+ F+    +   IG+ S+  W++LPK +GI+ S +E+
Sbjct:   99 FRVLYNVHKKFHLHRISSEEASYRLTKVTK-KYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI-NTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLPKERGIRQSELEK 250          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 51/145 (35.17%), Postives = 76/145 (52.41%), Query Frame = -3
Query:  311 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGK 742
            +R+L D +G   LH + +E A FKLCK+ +    + G   +N +DGR     D   +  D +KL + E +I + I F+  ++ +VTGGR+ G +G IK     + S   T  I+   G  F T    VF IGK  +  +SLP GK
Sbjct:  100 YRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNYLSDDEF-RVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIGKIKKINITRSSMPNTAVIETGAGKTFLTLKDYVFVIGK-DESVISLPGGK 242          
The following BLAST results are available for this feature:
BLAST of CN185629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4_YEAST1.984e-5361.7840S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4Y2_HUMAN1.984e-5360.5140S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_SPOFR2.591e-5360.5140S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]
RS4_CANAL1.679e-5263.9240S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_DICDI2.124e-4758.1740S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_CAEEL6.181e-4758.6040S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH2.971e-4151.5940S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_HORSE1.129e-4065.2240S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_ENCCU1.939e-1634.4240S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_METTH4.044e-1435.1730S ribosomal protein S4e OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185629 ID=CN185629; Name=CN185629; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTTTTTTTTTTTCGATAAAGAGATACATGAACTCAGTTTAGATCG
CTGAAAATAACATCCACCAAATAGTAGCTCATTTAAAAAAGGACAAAGCA
GGTTCAAAATTGTGCTGATAAAAATAAAAATAAAAATAAAGATTCATTTT
TGCATCGGTCCTACTTCAGCTTTAGAGAGTGCCAATCAGCTCTAATTCAA
CAAGAAAAAACAAAGCAGCAAAATGCATCCAAATTCATTGTAAAAGCTTA
AGCAGCAGCCTGGGCAGCCTGTCTCTTCCTAGCTTCCTCAATGATGGACA
ACTTAATACCCTTGCCCTTAGGAAGTGACACCCATGGTTTTGAACCCTTC
CCGATGGTGAACACATTGCCTAGACGAGTTGCAAACTCATGACCAAGGGC
ATCTTGAATATGGATGGTCTCAAAACTTCCCTTATGCTTTTCCCTGTTCT
TGATGATTCCAACTCGACCTCTGTTTCTACCCCCAGTGACCATGACAATA
TTCCCAACATCAAACTTGATGAAGTCAGTGATCTTGTTCTCTTCTAAGTC
AAGTTTGATGGTATCATTGGCTTTGATGAGTGGGTCAGGGTAGCGGATGG
TACGCCCATCATAGGTGTTGATGTATGGGATACCTTTCTGGCCAAACTGG
ACTGATCTAACTTTGCAAAGCTTGAATTTTGCCTCCTCATCTCTGAGGGA
ATGGAGACCGAAGCCACCCTTGGTGTCCTAAAGGAGACGGAAGT
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