CN185628

Overview
NameCN185628
Unique NameCN185628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10427 contig Csv1_Contig10427:1183..1880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185628 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = -3
Query:  166 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 441
            +P   GE  +DC ++ +LP +SF +GGK + LT +QY+LK  +G    C+SG   L++ PP GPLWILGDVF+G Y+TVFD  + RVGFA++
Sbjct:  304 IPLIQGEYMIDCKKVPTLPTISFNVGGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESNRVGFAKS 395          
BLAST of CN185628 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  166 VNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 462
            +N+     P   GE  VDCS +  LP +SF +GGK FDL    Y+L+V +     C+SGF  +D+ PP GPLWILGDVF+G Y+T FD  N RVGFA A
Sbjct:  288 INKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDLEGADYVLRVAQMGKTICLSGFMGIDIPPPNGPLWILGDVFIGKYYTEFDMGNDRVGFATA 386          
BLAST of CN185628 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  163 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 441
            +P   GE  + C ++SSLP V+  +GGK + L+P+ Y LKV + +   C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD    RVG AEAA
Sbjct:  296 VPLIQGEYMIPCEKVSSLPEVTVKLGGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDQNRVGLAEAA 388          
BLAST of CN185628 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = -3
Query:  172 ERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFA 480
            E++ NY+      + +  GE  V CS LS +P V+FTI G  + LTP+QY+L+ G G    C SGF  LD++PP GPLWILGDVF+G Y++VFD  N RVGFA
Sbjct:  291 EQLQNYIG-----VTNTNGEYGVSCSTLSLMPSVTFTINGLDYSLTPEQYMLEDGGG---YCSSGFQGLDISPPSGPLWILGDVFIGQYYSVFDRGNNRVGFA 385          
BLAST of CN185628 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = -3
Query:  166 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 441
            +P   GE  + C ++S+LP V+  +GGK++ L+ + Y LKV +G    C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD    RVG A+A
Sbjct:  316 VPLIQGEYMIPCEKVSTLPDVTLKLGGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGCYYTVFDRDQNRVGLAQA 407          
BLAST of CN185628 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = -3
Query:  163 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 441
            +P   GE  + C ++ SLP V+ T+GGK + L+ + Y LKV +     C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD    RVG AEAA
Sbjct:  253 VPLIQGEYMIPCEKVPSLPDVTVTLGGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDLNRVGLAEAA 345          
BLAST of CN185628 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  172 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQ-CISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFA 441
            +P   GE  V+CS++ SLP ++F +GG+ FDL    YIL++  G+    C+SGF  +D+  P GPLWILGDVF+G +++VFD+ N RVGFA
Sbjct:  302 IPLFNGEYEVECSKIPSLPNITFNLGGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIGRFYSVFDHGNKRVGFA 392          
BLAST of CN185628 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = -3
Query:  172 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFA 426
            G+  VDCS L+ +P V+FTI G  + +TP QY L+ G G    C SGF  LD+ PP GPLWILGDVF+G Y++VFD  N RVG A
Sbjct:  304 GDYEVDCSVLNEMPTVTFTINGIGYQMTPQQYTLQDGGG---VCSSGFQGLDIPPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of CN185628 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = -3
Query:  172 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFA 426
            G+  VDC+ L+ +P ++FTI G  + +TP QY L+  +G    C SGF  LD++PP GPLWILGDVF+G Y++VFD  N RVG A
Sbjct:  304 GDYEVDCTVLNKMPTMTFTINGIGYQMTPQQYTLQDDDG---VCSSGFQGLDISPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of CN185628 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = -3
Query:  163 IFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 357
            +F LTP+QYILK   G+A QCISGF+A+D A   GPLWILGDVFM PYHTVFDY N+ VGFAEAA
Sbjct:  205 VFGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 265          
The following BLAST results are available for this feature:
BLAST of CN185628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CATD_CLUHA2.510e-2350.00Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
ASPP_AEDAE9.539e-2350.51Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATD_BOVIN1.246e-2251.61Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATE_RANCA3.625e-2251.46Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]
CATD_CANFA2.350e-2148.91Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CATD_PIG5.234e-2150.54Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
ASP3_CAEEL1.523e-2049.45Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
CATEA_XENLA9.871e-2055.29Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
CATEB_XENLA6.398e-1951.76Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]
CARDH_CYNCA8.357e-1972.31Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185628 ID=CN185628; Name=CN185628; organism=Citrus sinensis; type=EST; length=698bp
CATATAAACAAAGTCCAACGTCATTGGGCTTCTCAACAGCTGTCATACAT
CAGAGCATTTACATAGAACAGTTATTTAAGGTTTAGTTTCAACATCTTAA
AGAAACAACTGAAATTCCACGAGGTACGGTTCACTGAGCATAATTTAAAA
CAAACTTATTTACGCGGCTTCAGCAAATCCCACTCTCATGTTGCTGTAGT
CAAAGACTGTGTGGTAGGGACCCATAAAAACATCCCCCAAGATCCAGAGA
GGTCCACGTGGTGGGGCAACATCTAGAGCTGAGAATCCACTTATACATTG
AGCTGCATCTCCCTCGCCCACTTTGAGGATGTACTGATCAGGAGTAAGGT
CAAATATCTTTCCACCAATCGTAAAGGAAACAATAGGCAAGGAAGACAAT
CTGCTACAGTCAACAGCCGATTCTCCCATAGGACTAGGCAACCGATCACA
GAGCTCATTGACATAGTTAAGAATGCGCTCTTGTGTTTGGTTCTGCTTGA
GCTGGTTCTGCATCCACACAACTGCCATCTCACAAGTAGAGCACATTGCA
TCATGGAAACCACCAGATGCTCTATGATTATTCTCAGGAACGACACTCTC
AATGCCCATACTCACACCTCGAGACCCATCAAATGTGCACAAACCAATCT
GTGAGCAAATTTTTTGAGGTTCATCCTTAGCTAAAAGCATATTGATGA
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