CN185628

Overview
NameCN185628
Unique NameCN185628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10427 contig Csv1_Contig10427:1183..1880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185628 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = -3 
Query:  172 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFA 426
            G   V+C+ + S+P ++F I G    L P  Y+L     +   C  G     +  P G PLWILGDVF+  Y+TVFD +  RVGFA
Sbjct:  306 GNFVVNCNSIQSMPTITFVISGSPLPLPPSTYVLN----NNGYCTLGIEVTYLPSPNGQPLWILGDVFLREYYTVFDMAANRVGFA 387
The following BLAST results are available for this feature:
BLAST of CN185628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PEPB_CANFA6.413e-1140.70Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185628 ID=CN185628; Name=CN185628; organism=Citrus sinensis; type=EST; length=698bp
CATATAAACAAAGTCCAACGTCATTGGGCTTCTCAACAGCTGTCATACAT
CAGAGCATTTACATAGAACAGTTATTTAAGGTTTAGTTTCAACATCTTAA
AGAAACAACTGAAATTCCACGAGGTACGGTTCACTGAGCATAATTTAAAA
CAAACTTATTTACGCGGCTTCAGCAAATCCCACTCTCATGTTGCTGTAGT
CAAAGACTGTGTGGTAGGGACCCATAAAAACATCCCCCAAGATCCAGAGA
GGTCCACGTGGTGGGGCAACATCTAGAGCTGAGAATCCACTTATACATTG
AGCTGCATCTCCCTCGCCCACTTTGAGGATGTACTGATCAGGAGTAAGGT
CAAATATCTTTCCACCAATCGTAAAGGAAACAATAGGCAAGGAAGACAAT
CTGCTACAGTCAACAGCCGATTCTCCCATAGGACTAGGCAACCGATCACA
GAGCTCATTGACATAGTTAAGAATGCGCTCTTGTGTTTGGTTCTGCTTGA
GCTGGTTCTGCATCCACACAACTGCCATCTCACAAGTAGAGCACATTGCA
TCATGGAAACCACCAGATGCTCTATGATTATTCTCAGGAACGACACTCTC
AATGCCCATACTCACACCTCGAGACCCATCAAATGTGCACAAACCAATCT
GTGAGCAAATTTTTTGAGGTTCATCCTTAGCTAAAAGCATATTGATGA
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