CN185620

Overview
NameCN185620
Unique NameCN185620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185620 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.754e-18
Identity = 46/138 (33.33%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  190 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR 603
            A  RI K++ +L   P T   +    +D+ +++  I  P +  Y  G F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + ++++  +E   +
Sbjct:   30 AQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVIC-PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of CN185620 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.108e-18
Identity = 42/123 (34.15%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  262 VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 624
            V ++M  +     GPS++PY+GG++ V +  P +YP+K P + F  ++FHPNI+  +GS+CLD++ + WSP   +  +  + +  LL  PN  DPL  E A +   +   Y +  R +  +YA
Sbjct:   25 VNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYA 147          
BLAST of CN185620 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.383e-17
Identity = 40/128 (31.25%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  271 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL------------DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 618
            ++F WQ TI+GP ++ Y GG F   + FP +YP  PP V F ++++HPN+  +G +C+            ++  E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  + +++   R   +K
Sbjct:   36 NVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRK 163          
BLAST of CN185620 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.806e-17
Identity = 48/143 (33.57%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  208 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDIL--KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 627
            ++  DL+++     +A PV+EDM  W+  I G  +S + G VF +TIHF  +Y + PP V F T  FHPN++ + G  C+D L   E+W+   T+S +LL++  +L++P  ++P+  E A +   D++ Y +  R + +   M
Sbjct:   11 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLFNRPLQM 153          
BLAST of CN185620 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.359e-17
Identity = 51/151 (33.77%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  196 KRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 624
            K ++KE+ +L+ + P +C    P    + ++Q T++ P +  Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  + +    + ++YA
Sbjct:   35 KLLVKEVAELEANLPCTCKVNFPDPNKLHYFQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
BLAST of CN185620 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.359e-17
Identity = 45/135 (33.33%), Postives = 73/135 (54.07%), Query Frame = 1
Query:  199 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR 603
            R+ K++ +L        S      D+ +++ TI  P +  Y  G F+ +      YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ V+  +  L T+PN +DPL  E A + + +   +E   R
Sbjct:   35 RLHKDISELNLPKSCKISFPNGKNDLMNFEVTIK-PDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168          
BLAST of CN185620 vs. ExPASy Swiss-Prot
Match: U2D2L_HUMAN (Putative ubiquitin-conjugating enzyme E2 D2-like protein OS=Homo sapiens GN=UBE2DNL PE=5 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.081e-17
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  187 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFH 411
            MA K I KE  +L +DP   CSAGPV +DM HWQATI  P+DS Y GGVF   + FP DY FKPPK+ F   ++H
Sbjct:    1 MALKLIHKEFLELARDPQPHCSAGPVWDDMLHWQATITRPNDSSYLGGVFF--LKFPSDYLFKPPKIKFTNGIYH 73          
BLAST of CN185620 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.024e-17
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  190 ASKRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARS 606
            A  RI K++ DL+     S S   P+  ++ H +   + P +  Y GG F   I    +YP  PPKV    K++HPNI+  G++CL+IL++ W+P L ++ +L+ +  L   PN +DPL  E A     D   + S  R+
Sbjct:   24 AQIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE---IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRT 160          
BLAST of CN185620 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.864e-17
Identity = 46/143 (32.17%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  208 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDIL--KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 627
            ++  DL+++     +A PV+EDM  W+  I G  +S + G VF +TIHF  +Y + PP V F T  FHPN++ + G  C+D L   ++W+   T+S +LL++  +L++P  ++P+  E A +   D++ Y +  + + +   M
Sbjct:   11 RDFYDLKENNYKGITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLYRTILKLFNRPLQM 153          
BLAST of CN185620 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.864e-17
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  199 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 627
            R+ +E+ D+ K+           +D+  W+    GP  +PY  G +L  I F  +YP   P + F T + H NIN+ G +C  IL   ++P + IS +L  I  LL +P+ +DPL   +A +Y      YE+    +  K+A+
Sbjct: 1137 RVQREIVDVMKNQHPDIDVYINEQDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLAMIYYDANGLYEAQIIDYVNKFAL 1279          
The following BLAST results are available for this feature:
BLAST of CN185620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC12_BOVIN4.754e-1833.33NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC8_SCHPO8.108e-1834.15Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBC7_WHEAT1.383e-1731.25Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBE2U_HUMAN1.806e-1733.57Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBE2F_CHICK2.359e-1733.77NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]
UB12L_ARATH2.359e-1733.33Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
U2D2L_HUMAN3.081e-1756.00Putative ubiquitin-conjugating enzyme E2 D2-like p... [more]
UBC12_SCHPO4.024e-1733.57NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBE2U_MACFA6.864e-1732.17Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBC4_MIMIV6.864e-1730.77Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185620 ID=CN185620; Name=CN185620; organism=Citrus sinensis; type=EST; length=649bp
ATGGTTGAAGGACAACAAAGCAAGGGGTTGATAGAGGAGCGAGGCGGGGG
CGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGACGCTATC
GCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTAAGGTTC
GTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAAGCG
TATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCA
GCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATG
GGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCA
TTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCA
AGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATC
CTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTC
TATCTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGG
AGATTGCCCACATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCC
AGGAGCTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGATATT
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