CN185603

Overview
NameCN185603
Unique NameCN185603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185603 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = -2
Query:  373 ISDFGLAK-LIPANMTHVSTRVAGTIGYLAPEYAIRGQVTRKADIYSFGVLLVEIVSGRCNTNMRLPTEEQYLLERTWDLYERREL----ILLVDTSLNGDFDAEEACRFLKVGLLCTQDTPKLRPSMSTVVQML 762
            +SDFGL+K    A+ +H++T V GT GYL PEY    Q+T K+D+YSFGV+L+E++ GR   +     +   L+     L+ R  L      +VD  L   FD     +   + + C       RPS++ V+  L
Sbjct:  748 VSDFGLSKQFTKADASHITTVVKGTAGYLDPEYYSTLQLTEKSDVYSFGVVLLELICGREPLSHSGSPDSFNLV-----LWARPNLQAGAFEIVDDILKETFDPASMKKAASIAIRCVGRDASGRPSIAEVLTKL 877          
BLAST of CN185603 vs. ExPASy Swiss-Prot
Match: Y1848_ARATH (Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  373 ISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIRGQVTRKADIYSFGVLLVEIVSGRCNTN-------MRLPTEEQYLLERTWDLYERRELILLVDTSLNGDFDAEEACRFLKVGLLCTQDTPKLRPSMSTVVQML 762
            +SDFGLA+L+ ++ T+ +       GY APE     +V++K D+YSFGV+L+E+++G+  +N       + LP   + +    W    RRE+      SL  D + E     +++GL CT   P  RP MS VV+ +
Sbjct:  512 VSDFGLAQLVGSSATNPNRAT----GYRAPEVTDPKRVSQKGDVYSFGVVLLELITGKAPSNSVMNEEGVDLPRWVKSVARDEW----RREVFDSELLSLATD-EEEMMAEMVQLGLECTSQHPDQRPEMSEVVRKM 639          
BLAST of CN185603 vs. ExPASy Swiss-Prot
Match: WAKLR_ARATH (Wall-associated receptor kinase-like 21 OS=Arabidopsis thaliana GN=WAKL21 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 44/136 (32.35%), Postives = 69/136 (50.74%), Query Frame = -2
Query:  373 ISDFGLAKL---IPANMTHVSTRVAGTIGYLAPEYAIRGQVTRKADIYSFGVLLVEIVSGRCNTNMRLPTEEQYLLERTWDLYERRELILLVDTSLNGDFDAE---EACRFLKVGLLCTQDTPKLRPSMSTVVQML 762
            ISDFGL++L        +H+ST   GT GYL P+Y    Q++ K+D+YSFGV+LVEI+SG    +   P  E  L     D   R  ++ ++D  LN + + +         ++   C      +RP+M  + + L
Sbjct:  453 ISDFGLSRLGMSTDFEASHISTAPQGTPGYLDPQYHQDFQLSDKSDVYSFGVVLVEIISGFKVIDFTRPYSEVNLASLAVDRIGRGRVVDIIDPCLNKEINPKMFASIHNLAELAFRCLSFHRNMRPTMVEITEDL 588          
BLAST of CN185603 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 46/133 (34.59%), Postives = 71/133 (53.38%), Query Frame = -2
Query:  373 ISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIRGQVTRKADIYSFGVLLVEIVSGRCNTNMRLPTEEQYLLERTW---DLYERRELILLVDTSLNGDFDAEEACRFLKVGLLCTQDTPKLRPSMSTVVQML 762
            +SD+GLA     N  H +++  G +GY APE       T+K+D+YSFGV+++E+++GR   +   P  EQ L+   W    L +   L  +VD +L G +  E    F  +  +C    P LRP +S VV+ L
Sbjct:  559 LSDYGLA-----NFHHRTSQNLG-VGYNAPECTDPSAYTQKSDVYSFGVVMLELLTGRKPYDSGRPKAEQSLVR--WAKPQLKDMDTLDEMVDPALCGLYAPESVSSFADIVSICVMTEPGLRPPVSNVVEAL 683          
The following BLAST results are available for this feature:
BLAST of CN185603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
Y5487_ARATH9.813e-1134.07Probable LRR receptor-like serine/threonine-protei... [more]
Y1848_ARATH9.813e-1133.58Probable inactive receptor kinase At1g48480 OS=Ara... [more]
WAKLR_ARATH9.813e-1132.35Wall-associated receptor kinase-like 21 OS=Arabido... [more]
SRF4_ARATH9.813e-1134.59Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185603 ID=CN185603; Name=CN185603; organism=Citrus sinensis; type=EST; length=763bp
GAGGAAAACTTCTCCATTTACAAGAAAATACCCAGTAAGTTTTGAAATAC
CAAATGAATACAAGATTGCAAAATCTACAAGGGACAACAAAGCCTCAAAA
CCCTAAAATGAAGAAATAAATTACTATGATTTGCTTTTAAACCGAATTAA
TGTTCAAGTGCTCCTATCATATGATACTGTAAAGGTCATAGTAGCAGCAC
TCGTGGCTGCCGATGACAAATTTGAGTTGTCTGGATTGTCCGAGCTATTA
TAAGTTGATGAAGTCGTTGTTTCCAACTTAGGTTTAGGGGGACCTCTTAC
TTTGAGGTCCATGAAATCGGAAATTAATCCTGGCTTTGTTATTTTATCAT
CATCTATGTCTTTCTCACCCATCAGCATCTGGACCACAGTTGACATGGAT
GGCCGGAGCTTTGGAGTGTCTTGAGTGCAGAGAAGACCAACCTTTAGGAA
TCTACAAGCCTCCTCAGCATCAAAATCGCCATTCAATGATGTATCTACCA
GTAGTATCAACTCCCTTCGCTCATATAAATCCCATGTCCGTTCTAGAAGA
TATTGCTCTTCGGTGGGCAATCGCATATTTGTGTTACACCTCCCACTGAC
TATTTCCACAAGGAGTACACCAAAACTGTATATATCTGCTTTCCGTGTCA
CTTGCCCTCTTATTGCATACTCTGGTGCTAGATAACCTATTGTTCCAGCA
ACCCTAGTGCTAACATGAGTCATGTTGGCCGGGATAAGCTTTGCAAGACC
AAAATCTGAAATT
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