CN185599

Overview
NameCN185599
Unique NameCN185599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185599_ssr7 microsatellite CN185599_ssr7:7..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6192 contig Csv1_Contig6192:71..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185599 vs. ExPASy Swiss-Prot
Match: ARP6_YARLI (Actin-like protein ARP6 OS=Yarrowia lipolytica GN=ARP6 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 52/197 (26.40%), Postives = 92/197 (46.70%), Query Frame = 3
Query:  114 LVCDNGTGMVKAGFAGD-DAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL--KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTG--IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYS 689
            ++ DNG+  +K+   GD + P A+   I GR            K  YVG +    +   +L  K P E G + NWD  + +W + FYN       +  +LLT+ PL        + Q++FE +     +    A L  ++SG+     +V+D+G   +H  P+  G      I R+++ G+ +T+ L + ++ R Y+
Sbjct:    1 MILDNGSYAIKSDRTGDAETPNAL---IRGR-----------DKTVYVGQDLTKCKDYASLVFKRPSEKGQLINWDIQKAVWDNLFYNPQTGVDTDSSLLLTQYPLTLPQVSANIDQVVFEEYGFEQYHRTEAANLVAWSSGQCLDACLVVDAGFNATHVTPVLFGQVHEPGIRRVNVGGKTMTNLLKETVSFRHYN 183          
BLAST of CN185599 vs. ExPASy Swiss-Prot
Match: ARP5_DROME (Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 46/206 (22.33%), Postives = 96/206 (46.60%), Query Frame = 3
Query:  114 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-----HTGVMVGMGQK-------DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLS-----LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKIL 671
            LV DNG+   + G++    P   F +++ +PR           G   +       +  VG++  +   +   LK P E  +++NW+  E+I+ + F        +  +HP++LTEA  NP   R++M +++FE +  P++   I A+ S           +  +++  G   +H +P+ +G      + RL++ G  +  +L +++
Sbjct:    7 LVIDNGSYECRVGWSDSKEPDLRFRNVLTKPRKDRKKEAAASEGSASQTTVEQSAEIQVGNDITNIEAVRAHLKSPFERNVITNWNHQEQIFDYIFTKMGFDGQDKIDHPIILTEALANPNFCRQQMNELLFECYGIPSVSYGIDALYSWKHHQQKQKNISDALIISFGYSTTHVIPVLDGKLQLEHVRRLNVGGYHIITYLFRLM 212          
BLAST of CN185599 vs. ExPASy Swiss-Prot
Match: ARP6_MOUSE (Actin-related protein 6 OS=Mus musculus GN=Actr6 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 52/195 (26.67%), Postives = 92/195 (47.18%), Query Frame = 3
Query:  114 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTG-----IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTER 680
            LV DNG    K G++ D    +V P+   R +   +      +     DE +   G+  +  P + G + NWD   ++W + F  E+ +V   +  +++TE   N  + +E M +I+FE +   A+       LS +   R        I++DSG   +H VP         AI+R+++ G+ LT+HL +I++ R
Sbjct:    4 LVLDNGAYNAKIGYSHDSV--SVIPNCQFRSKTARLKTFTANQI----DEIKDPSGLFYI-LPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYR 191          
BLAST of CN185599 vs. ExPASy Swiss-Prot
Match: ARP5_DROPS (Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 51/215 (23.72%), Postives = 102/215 (47.44%), Query Frame = 3
Query:   96 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT-----------GVMVGMGQK---DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSL--YASGR---TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKIL 671
            G   + LV DNG+   + G+     P   F +++ +PR             G    +  +   +  VG++  +   +   LK P E  I++NW+  E+I+ + F  ++    E+   +P++LTEA  NP   R+ M++++FE +  PA+   I A+ S   Y + R   +  +++  G   +H +P+  G      + RL++ G  +  +L+ ++
Sbjct:    2 GSPKRVLVIDNGSYECRVGWNNTKEPALRFRNVLTKPRKDRKKEAIPDTTDGAPTPVAAEVPAEIQVGNDITNIEAVRAHLKSPFERNIITNWNHQEQIFDYIF-TKMGFEGEQSIANPIVLTEALANPNFCRQNMSELLFECYGIPAVSYGIDALYSWEHYQNRRKKVSDALIISLGYSTTHVIPVLNGKLQLQHVRRLNVGGYHIITYLLCLM 215          
BLAST of CN185599 vs. ExPASy Swiss-Prot
Match: ARP6_HUMAN (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 51/195 (26.15%), Postives = 93/195 (47.69%), Query Frame = 3
Query:  114 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTG-----IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTER 680
            LV DNG    K G++ ++   +V P+   R +   +      +     DE +   G+  +  P + G + NWD   ++W + F  E+ +V   +  +++TE   N  + +E M +I+FE +   A+       LS +   R        I++DSG   +H VP         AI+R+++ G+ LT+HL +I++ R
Sbjct:    4 LVLDNGAYNAKIGYSHENV--SVIPNCQFRSKTARLKTFTANQI----DEIKDPSGLFYI-LPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYR 191          
BLAST of CN185599 vs. ExPASy Swiss-Prot
Match: ARP9_SCHPO (SWI/SNF and RSC complexes subunit arp9 OS=Schizosaccharomyces pombe GN=arp9 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 42/130 (32.31%), Postives = 63/130 (48.46%), Query Frame = 3
Query:  300 PIEHGIVSNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTE 677
            PI+ G V +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ  FE    P   +A + ++ LYA G   G+V+D G   +   PI +G  +  A  +L L GR +T HL  +L E
Sbjct:  113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRE 241          
BLAST of CN185599 vs. ExPASy Swiss-Prot
Match: ARP6_CHICK (Actin-related protein 6 OS=Gallus gallus GN=ACTR6 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 52/195 (26.67%), Postives = 92/195 (47.18%), Query Frame = 3
Query:  114 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTG-----IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTER 680
            LV DNG    K G++   A  +V P+   R +   +      +     DE +   G+  +  P + G + NWD   ++W + F  E+ +V   +  +++TE   N  + +E M +I+FE +   A+       LS +   R        I++DSG   +H VP         AI+R+++ G+ LT+HL +I++ R
Sbjct:    4 LVLDNGAYNAKIGYS--HAHVSVIPNCQFRSKTARLKTFTANQL----DEIKDPSGLFYI-LPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFVDTNIIITEPYFNFSSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYR 191          
The following BLAST results are available for this feature:
BLAST of CN185599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
ARP6_YARLI5.898e-1226.40Actin-like protein ARP6 OS=Yarrowia lipolytica GN=... [more]
ARP5_DROME5.898e-1222.33Actin-related protein 5 OS=Drosophila melanogaster... [more]
ARP6_MOUSE2.241e-1126.67Actin-related protein 6 OS=Mus musculus GN=Actr6 P... [more]
ARP5_DROPS3.823e-1123.72Actin-related protein 5 OS=Drosophila pseudoobscur... [more]
ARP6_HUMAN4.993e-1126.15Actin-related protein 6 OS=Homo sapiens GN=ACTR6 P... [more]
ARP9_SCHPO6.521e-1132.31SWI/SNF and RSC complexes subunit arp9 OS=Schizosa... [more]
ARP6_CHICK8.517e-1126.67Actin-related protein 6 OS=Gallus gallus GN=ACTR6 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185599 ID=CN185599; Name=CN185599; organism=Citrus sinensis; type=EST; length=705bp
GAGGCTAAAACAAAACAAAACAAGGAGGCGTCCATTTTGTGCGCCTCGTA
ATTCGCTCGTTCTCATCTCATAACCGGTAGCAGAAGATGGCAGACGGTGA
GGATATTCAGCCACTTGTTTGTGATAATGGAACAGGAATGGTTAAGGCTG
GGTTTGCCGGAGATGATGCTCCACGGGCGGTGTTCCCCAGTATTGTTGGT
CGTCCACGTCACACTGGTGTGATGGTTGGCATGGGTCAGAAGGATGCGTA
TGTTGGTGATGAGGCTCAATCGAAGAGAGGTATTTTGACTTTGAAATACC
CCATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAGAAGATCTGG
CATCACACCTTCTACAATGAGCTTCGTGTTGCCCCTGAAGAGCACCCTGT
TCTTCTTACTGAGGCTCCTCTCAATCCGAAGGCTAATCGCGAGAAGATGA
CCCAGATTATGTTTGAGACCTTTAATGCTCCCGCTATGTATGTTGCCATC
CAGGCCGTTCTTTCCTTGTATGCGAGTGGTCGTACCACTGGTATTGTGTT
GGACTCTGGTGATGGTGTGAGCCATACAGTTCCTATATATGAGGGTTATG
CCCTCCCACATGCAATACTTCGTCTTGACCTTGCTGGTCGCGACCTCACT
GATCACTTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACCACCAC
GGCGG
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