CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:697..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 321.627 bits (823), Expect = 2.681e-87
Identity = 161/203 (79.31%), Postives = 183/203 (90.15%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 614
            ARACAAQTNATFLKLA PQLVQM+IG+GAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFDSE SGDREVQRTMLELLNQLDGFSSDDR+KV+AATNR D+LDPAL+RSGRLDRKIE P PSE++RA+ILQIHSRKMT   D+N++ELARSTD+FNGAQLKAV VEAGM+ALR   + V HEDF EGI +VQA+K  S+++YA
Sbjct:  232 ARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSKSVSFYA 434          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.964e-86
Identity = 157/203 (77.34%), Postives = 181/203 (89.16%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 614
            ARACAAQ+NATFLKLA PQLVQMFIGDGAKLVRDAF LAKEKSP IIFIDE+DAIGTKRFDSE +GDREVQRTMLELLNQLDGFSSDDR+KVIAATNR D LDPAL+RSGRLDRK+E P P+EEAR  IL+IHSRKM +  D+N+EELARSTD++NGA LK+VCVEAGM+ALR+  T++NHE F +GI++VQ +K  +L Y+A
Sbjct:  236 ARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMDGILEVQMRKSKTLQYFA 438          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 9.235e-80
Identity = 148/202 (73.27%), Postives = 174/202 (86.14%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 611
            ARACA++TNATFLKLAGPQLVQM+IGDGA+LVRDAF LAKE+ P IIFIDEIDAIG KR DS+ +GDREVQRTMLELLNQLDGFSS + +K+IAATNR DILDPAL+RSGRLDRKIE P P+   R RILQIH+RKM+V  DVNF+ELARST+ FNGAQ KAVCVEAGM ALR++ TE++  DF +GI +V ++KK+ L Y+
Sbjct:  199 ARACASKTNATFLKLAGPQLVQMYIGDGARLVRDAFALAKERKPTIIFIDEIDAIGAKRSDSDQTGDREVQRTMLELLNQLDGFSSSEEVKIIAATNRVDILDPALLRSGRLDRKIEFPLPNTLGRKRILQIHARKMSVRDDVNFDELARSTEGFNGAQCKAVCVEAGMAALRKEKTEISQNDFMDGIQEVLSRKKSKLLYF 400          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.256e-72
Identity = 141/178 (79.21%), Postives = 152/178 (85.39%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE 539
            ARACAAQT ATFLKLAGPQLVQMFIGDGAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFDSE +GDREVQRTMLELLNQLDGF  + ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKM V PDVN+EELAR          K   VEAGM+ALRR ATE
Sbjct:  221 ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCPTISMALSAKQFGVEAGMIALRRGATE 398          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.088e-59
Identity = 112/196 (57.14%), Postives = 145/196 (73.98%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A+A A  T+ATFL++ G +L+Q ++GDG KLVR+ F++A E SP I+FIDEIDA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIE P P  + R RI QIH+ KMT+  DVN EE   + D+F+GA +KA+C EAG+LALR    +V H DF +   +V  KKK
Sbjct:  244 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKEKVMFKKK 439          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.268e-59
Identity = 111/196 (56.63%), Postives = 145/196 (73.98%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A+A A  T+ATFL++ G +L+Q ++GDG KLVR+ F++A + SP I+FIDEIDA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIE P P  + R RI QIH+ KMT+  DVN EE   + D+F+GA +KA+C EAG+LALR    +V H DF +   +V  KKK
Sbjct:  239 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKK 434          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.986e-59
Identity = 111/196 (56.63%), Postives = 145/196 (73.98%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A+A A  T+ATFL++ G +L+Q ++GDG KLVR+ F++A + SP I+FIDEIDA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIE P P  + R RI QIH+ KMT+  DVN EE   + D+F+GA +KA+C EAG+LALR    +V H DF +   +V  KKK
Sbjct:  239 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKK 434          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58
Identity = 109/196 (55.61%), Postives = 146/196 (74.49%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A+A A QT+ATFL++ G +L+Q ++GDG KLVR+ F++A+E +P I+FIDEIDA+GTKR+DS   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIE P P E+ + RI  IH+ +MT+  DVN  EL  + DD +GA +KA+C EAG++ALR    +V +EDF +    V  +KK
Sbjct:  235 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 430          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.460e-58
Identity = 109/196 (55.61%), Postives = 147/196 (75.00%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A+A A QT+ATFL++ G +L+Q ++GDG KLVR+ F++A+E +P I+FIDEIDAIGTKR+DS   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIE P P E+ + RI QIH+ +MT+  DV  ++L  + DD +GA +KA+C EAG++ALR    +V +EDF +    V  KK+
Sbjct:  236 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQ 431          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.460e-58
Identity = 109/196 (55.61%), Postives = 147/196 (75.00%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A+A A QT+ATFL++ G +L+Q ++GDG KLVR+ F++A+E +P I+FIDEIDAIGTKR+DS   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIE P P E+ + RI QIH+ +MT+  DV  ++L  + DD +GA +KA+C EAG++ALR    +V +EDF +    V  KK+
Sbjct:  236 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQ 431          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS6A_YEAST2.681e-8779.3126S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS6A_SCHPO2.964e-8677.3426S protease regulatory subunit 6A OS=Schizosaccha... [more]
PRS6A_ENCCU9.235e-8073.2726S protease regulatory subunit 6A OS=Encephalitoz... [more]
PR6AA_XENLA9.256e-7279.2126S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PRS4_ORYSJ3.088e-5957.1426S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS4A_ARATH5.268e-5956.6326S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS4B_ARATH8.986e-5956.6326S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4_DROME3.415e-5855.6126S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_RAT4.460e-5855.6126S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE4.460e-5855.6126S protease regulatory subunit 4 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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