CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.890e-47
Identity = 94/196 (47.96%), Postives = 127/196 (64.80%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            ARA AA     FLK+    +V  +IG+ A+++R+ F  AKE  PC+IF+DEIDAIG +RF    S DRE+QRT++ELLNQ+DGF    + K+I ATNR D LDPAL+R GRLDRKIE+P P+E  R  IL+IH  K++   ++++E L + TD  NGA L+ V  EAG +A++ D   V   D      +V   KK
Sbjct:  183 ARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKK 378          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 181.415 bits (459), Expect = 4.330e-45
Identity = 88/196 (44.90%), Postives = 126/196 (64.29%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A+A AA   A F+      +V  +IG+ A+++R+ F  AKE  PCIIF+DE+DAIG +RF    S DRE+QRT++ELL Q+DGF +  + K+I ATNR D LDPAL+R GRLDRK+E+P P+E  R  I +IH+ K+    + +FE   + +D FNGA ++    EAG  A+R D   +N +D  + + +V   KK
Sbjct:  232 AKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK 427          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.819e-43
Identity = 90/203 (44.33%), Postives = 129/203 (63.55%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELP-HPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 614
            +A A  T A F+++ G + VQ ++G+G ++VRD F++A+E +P IIFIDEIDAI TKRFD++   DREVQR ++ELL Q+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P +     R  + Q  + KM + P+V+ +      D  +GAQ+ A+  +AG+LA+R+    +   D  E     +A K   +  +A
Sbjct:  186 KAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEA--YARAVKPTDMEQFA 386          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.376e-43
Identity = 87/175 (49.71%), Postives = 122/175 (69.71%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR-ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 530
            +A A  T A+F+++ G + VQ ++G+G ++VRD F++A+E SP IIFIDEIDAI TKRFD++   DREVQR +LELLNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P   +    R I    + KM++ P+V+ + L    +  +GA + A+  EAG+ A+R++
Sbjct:  218 KAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKN 392          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.981e-42
Identity = 84/186 (45.16%), Postives = 122/186 (65.59%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARAR-ILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 563
            +A A  T A F+++ G + V  ++G+G ++VRD F+LA+E +P IIFIDE+D+I TKRFD++   DREVQR ++ELL Q+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P+  +    R I    + KM++ P+ + + L    D  +GA + A+  EAG+ A+R++   +   D  E
Sbjct:  224 KAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPYLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEE 409          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.703e-41
Identity = 86/198 (43.43%), Postives = 129/198 (65.15%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKAS 599
            A+A A + +A F  ++G + V+MF+G GA  VRD F+ AKEK+PCI+FIDEIDA+G +R      G+ E ++T+ +LL ++DGFS D  + V+AATNR D+LD AL+R GR DR+I +  P+   R  IL++HS+K  +H DV  E +AR T  F+GA L  +  EA +L +RR   E+  ++  + I ++ A  + S
Sbjct:  221 AKAIAGEASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCIVFIDEIDAVGRQRGVGIGGGNDEREQTLNQLLTEMDGFSGDTGVIVVAATNRIDVLDSALLRPGRFDRQIMVSLPNINGRLAILKVHSKKKKIHKDVLLEVIARRTPGFSGADLANLLNEAAILTVRRGKVEITMKEIEDSIDKIIAGLEGS 418          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.882e-40
Identity = 81/193 (41.97%), Postives = 126/193 (65.28%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 584
            ARA A +    F   A  + V++F+G GA  VRD F+ AK K+PCI+FIDEIDA+G +R      G+ E ++T+ +LL ++DGFS +  + V+AATNR D+LD AL+R GR DR++ +  P    R +ILQ+HSR   +  DV+FE++AR T  + GA L+ +  EA +LA RR+  E++ ++ ++ + ++ A
Sbjct:  303 ARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRIKILQVHSRGKALTKDVDFEKIARRTPGYTGADLQNLMNEAAILAARRELKEISKDEISDALERIIA 495          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.882e-40
Identity = 85/193 (44.04%), Postives = 126/193 (65.28%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 584
            ARA A +    F  ++G   V+MF+G GA  VRD F+ AK+ +PCIIFIDEIDA+G +R      G  E ++T+ +LL ++DGFS+++ I +IAATNRADILDPAL+R GR DR+I++  P    R  +L++H+R   ++ DVN + +A  T  F+GA L+ +  EA ++A R D T+++     E I +V A
Sbjct:  216 ARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDVNLKTIATRTPGFSGADLENLLNEAALVAARHDHTKISMIHIEEAIDRVIA 408          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.882e-40
Identity = 81/193 (41.97%), Postives = 126/193 (65.28%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 584
            ARA A +    F   A  + V++F+G GA  VRD F+ AK K+PCI+FIDEIDA+G +R      G+ E ++T+ +LL ++DGF+ +  + V+AATNR D+LD AL+R GR DR++ +  P    R +IL++HSR   +  DV+FE++AR T  F GA L+ +  EA +LA RRD  E++ ++ ++ + ++ A
Sbjct:  282 ARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFAGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILEVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIA 474          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.882e-40
Identity = 81/193 (41.97%), Postives = 126/193 (65.28%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 584
            ARA A +    F   A  + V++F+G GA  VRD F+ AK K+PCI+FIDEIDA+G +R      G+ E ++T+ +LL ++DGFS +  + V+AATNR D+LD AL+R GR DR++ +  P    R +ILQ+HSR   +  DV+F+++AR T  F GA L+ +  EA +LA RR+  E++ ++ ++ + ++ A
Sbjct:  312 ARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEISDALERIIA 504          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS10_SCHPO7.890e-4747.96Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS10_YEAST4.330e-4544.9026S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PRS6B_SCHPO1.819e-4344.3326S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS6B_ASPNG2.376e-4349.7126S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS6B_YEAST9.981e-4245.1626S protease regulatory subunit 6B homolog OS=Sacc... [more]
FTSH_CYACA1.703e-4143.43Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH_TOBAC1.882e-4041.97Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_BACPF1.882e-4044.04Cell division protease ftsH homolog OS=Bacillus ps... [more]
FTSH1_ORYSJ1.882e-4041.97Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH1_ARATH1.882e-4041.97Cell division protease ftsH homolog 1, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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