CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:697..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.460e-58
Identity = 109/196 (55.61%), Postives = 147/196 (75.00%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A+A A QT+ATFL++ G +L+Q ++GDG KLVR+ F++A+E +P I+FIDEIDAIGTKR+DS   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIE P P E+ + RI QIH+ +MT+  DV  ++L  + DD +GA +KA+C EAG++ALR    +V +EDF +    V  KK+
Sbjct:  236 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQ 431          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.935e-58
Identity = 107/186 (57.53%), Postives = 142/186 (76.34%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 563
            A+A A QT+ATFL++ G +L+Q ++GDG KLVR+ F++A+E  P I+FIDEIDAIGTKR+DS   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIE P P E+ + RI QIH+ +MT+  DV  +EL  + DD +GA +KA+C EAG++ALR    +V +EDF +
Sbjct:  236 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 421          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.891e-57
Identity = 107/196 (54.59%), Postives = 145/196 (73.98%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A+A A QT+ATFL++ G +L+Q ++GDG K+VR+ F++A+E +P I+FIDEIDA+GTKR+DS   G+RE+QRTMLELLNQLDGF S   +KV+ ATNR + LDPAL+R GR+DRKIE P P E+ + RI QIH+ +MT+  +VN EE   + D+ +GA +KA+C EAG+LALR     V  EDF +    V  +KK
Sbjct:  239 AKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKSKENVLYRKK 434          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.440e-57
Identity = 107/197 (54.31%), Postives = 144/197 (73.10%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKA 596
            A+A A QT+ATFL++ G +L+Q ++GDG KLVR+ F++A E +P I+FIDEIDA+GTKR+DS+  G+RE+QRTMLELLNQLDGF +   +KVI ATNR + LDPAL+R GR+DRKIE P P  + + +I +IH+ KM +  DVN EE   S DD +GA +KA+C E+G+LALR     V H DF +   +V  +K A
Sbjct:  235 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVLYRKTA 431          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.874e-56
Identity = 107/199 (53.77%), Postives = 146/199 (73.37%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASL 602
            A+A A +TNATF+++ G +LV+ FIG+GA LV+D F+LAKEK+P IIFIDEIDAI  KR D+   GDREVQRT+++LL ++DGF +   +K+I ATNR DILDPA++R GR DR IE+P P E+ R  IL+IH+RKM +  DVN EE+A+ T+   GA+LKA+C EAGM A+R     V  +DF + + ++  KKK  +
Sbjct:  221 AKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKVKV 419          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.452e-56
Identity = 108/196 (55.10%), Postives = 145/196 (73.98%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A+A A   +ATF++LA P+LVQ FIG+GA+LVR+ F+LA+EK+P IIFIDEIDAIG +R     SGDREVQRT+ +LL ++DGF   D IKVIAATNR DILDPAL+R GR DR I++P P EE R  I +IH+R M +  DV+ ++LA+ T+  +GA +KA+C EAGM+A+R D   V  +DF + + +V  KK+
Sbjct:  230 AKAVANHADATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDFLKAVDRVMGKKE 425          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.299e-56
Identity = 108/194 (55.67%), Postives = 145/194 (74.74%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A+A A QT ATF+++ G + VQ +IG+GA+LVR+ FQLAKEK+P IIFIDE+DAI  +R +S+ SGDREVQRTM++LL +LDGF     +KVI ATNR DILDPA++R GR DR IE+P P+ E R +I +IH+RKM +  DV+F+ELAR T+  +GA +KA+C EAGM A+R +  +V   DF + I +V  K
Sbjct:  192 AKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKVLKK 385          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.215e-55
Identity = 104/199 (52.26%), Postives = 149/199 (74.87%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASL 602
            A+A A +T ATF+++ G +LVQ +IG+GA++VR+ F+LAKEKSP IIFIDEID+IG KR DS  SGDREVQRT+++LL ++DGF     ++++AATNR DILDPAL+R GR DR I++P P+ EAR +IL+IH+RKM +  DV+  ++A  TD+ +GA L A+ +EAGM A+R +   V+  DFN  + +V  ++  S+
Sbjct:  210 AKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNNRDVVDSSDFNAAVAKVMGERNRSM 408          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.072e-55
Identity = 104/184 (56.52%), Postives = 140/184 (76.09%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 557
            A+A A+QT+A+F+K+AG +LV  FIG+GAKLVRD FQ+A++  P ++FIDEIDAI +KR DS+ SGD EVQRTM++LL+++DGF     I++IAATNR D+LD A++R GR DR IE+PHP+   R +I +IH+R M V   V+F ELA  T D +GA +KA+C EAGM A+R D TEV  +DF
Sbjct:  200 AKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDHEPAVVFIDEIDAIASKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVDFGELAADTGDLSGADVKAICTEAGMFAIRDDRTEVRMQDF 383          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.534e-55
Identity = 106/198 (53.54%), Postives = 145/198 (73.23%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKAS 599
            A+A A +TNA+F+++ G +LV+ FIG+GAKLVRD F+LAKEKSPCIIFIDEIDA+ +KR +S   GDREVQRT+++LL ++DGF S   +K+IAATNR DILDPA++R GR DR IE+  P E+ R  I +IH+ KM +   V+  E+A+  ++  GA +KAVC EAGM A+R     V  +DF E +++V  KK+ S
Sbjct:  199 AKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNI-KSVDLREIAKMAENMVGADIKAVCTEAGMFAIREGREYVTTKDFKEALLKVTGKKEKS 395          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS4_HUMAN4.460e-5855.6126S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_CHICK9.935e-5857.5326S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS4_CAEEL2.891e-5754.59Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS4_DICDI6.440e-5754.3126S protease regulatory subunit 4 homolog OS=Dicty... [more]
PSMR_METJA1.874e-5653.77Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PSMR_METKA5.452e-5655.10Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_ARCFU9.299e-5655.67Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR_UNCMA1.215e-5552.26Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR2_HALSA2.072e-5556.52Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PSMR_METVS3.534e-5553.54Proteasome-activating nucleotidase OS=Methanococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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