CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.498e-21
Identity = 62/178 (34.83%), Postives = 106/178 (59.55%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV-SGDREVQRTMLELLNQLDGFSSDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A +   TF  ++   L   + G+  KLVR  F++A+  +P  IFIDEID+I ++R  SE     R V+  +L  ++ + G S +D  K   V+AATN    +D AL R  RL+++I +P PS + R  +L+I+ +++ +  DVN +++A   + ++GA +  VC +A ++A+RR
Sbjct:  254 AKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRR 429          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 69/216 (31.94%), Postives = 110/216 (50.93%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALRRDATE------------VNHEDFNEGIIQV-QAKKKASLNYY 611
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R  SE    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P E+ R  +L    +K     D      LA+ TD ++G+ L A+  +A +  +R    E            +  +DF+  + ++ ++    SLN Y
Sbjct:  533 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSY 746          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 69/216 (31.94%), Postives = 110/216 (50.93%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALRRDATE------------VNHEDFNEGIIQV-QAKKKASLNYY 611
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R  SE    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P E+ R  +L    +K     D      LA+ TD ++G+ L A+  +A +  +R    E            +  +DF+  + ++ ++    SLN Y
Sbjct:  533 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSY 746          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 69/216 (31.94%), Postives = 110/216 (50.93%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALRRDATE------------VNHEDFNEGIIQV-QAKKKASLNYY 611
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R  SE    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P E+ R  +L    +K     D      LA+ TD ++G+ L A+  +A +  +R    E            +  +DF+  + ++ ++    SLN Y
Sbjct:  533 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSY 746          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 69/216 (31.94%), Postives = 110/216 (50.93%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALRRDATE------------VNHEDFNEGIIQV-QAKKKASLNYY 611
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R  SE    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P E+ R  +L    +K     D      LA+ TD ++G+ L A+  +A +  +R    E            +  +DF+  + ++ ++    SLN Y
Sbjct:  533 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSY 746          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 65/178 (36.52%), Postives = 102/178 (57.30%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ---IHSR-KMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            R  A+Q  ATF  ++   L   ++G+G KLVR  F +A+ K P +IFIDEID++ + R +SE    R ++    E L QLDG ++  D+R+ V+ ATNR   LD A  R  R  +++ +  P  E+R +I+Q   + +R  +T H   N E +   TD ++GA ++ +C EA M  +R
Sbjct:  367 RCVASQCKATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSESEHESSRRIK---TEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR--RFQKRLYIALPEPESRTQIVQNLLVGTRHDITNH---NLERIRELTDGYSGADMRQLCTEAAMGPIR 536          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 63/176 (35.80%), Postives = 102/176 (57.95%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ-IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A AA++NATF  ++   L   ++G+G KLVR  F +A+E  P IIFIDE+D++  +R + E    R   R   E L + DG  S  DDR+ V+ ATNR   LD A++R  R  +++ +  P+EE R  +L+ +  ++ +        +LAR TD ++G+ L A+  +A +  +R
Sbjct:  357 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIR 527          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 63/176 (35.80%), Postives = 102/176 (57.95%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ-IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A AA++NATF  ++   L   ++G+G KLVR  F +A+E  P IIFIDE+D++  +R + E    R   R   E L + DG  S  DDR+ V+ ATNR   LD A++R  R  +++ +  P+EE R  +L+ +  ++ +        +LAR TD ++G+ L A+  +A +  +R
Sbjct:  390 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIR 560          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 63/176 (35.80%), Postives = 102/176 (57.95%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ-IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A AA++NATF  ++   L   ++G+G KLVR  F +A+E  P IIFIDE+D++  +R + E    R   R   E L + DG  S  DDR+ V+ ATNR   LD A++R  R  +++ +  P+EE R  +L+ +  ++ +        +LAR TD ++G+ L A+  +A +  +R
Sbjct:  392 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIR 562          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 61/174 (35.06%), Postives = 96/174 (55.17%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALR 524
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R  +E    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P E+ R  +L    +K     D      LA++TD ++G+ L A+  +A +  +R
Sbjct:  545 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLSRLLQKQGSPLDTEALRRLAKTTDGYSGSDLTALAKDAALEPIR 716          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
KTNA1_DANRE1.498e-2134.83Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
SPAST_DROYA1.957e-2131.94Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]
SPAST_DROSE1.957e-2131.94Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROME1.957e-2131.94Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROER1.957e-2131.94Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
FIGL1_CAEEL1.957e-2136.52Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
SPAST_RAT2.556e-2135.80Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_MOUSE2.556e-2135.80Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_HUMAN2.556e-2135.80Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
SPAST_DROAN2.556e-2135.06Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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