CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 62/179 (34.64%), Postives = 104/179 (58.10%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV-SGDREVQRTMLELLNQLDGFSSDD----RIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A +   TF  ++   L   + G+  KLVR  F++A+  SP  IFIDEID+I ++R  SE     R V+  +L  ++ + G S +D     + V+AATN    +D AL R  RL+++I +P PS + R  +L+I  R++ +  DV+   +A + + ++GA +  VC +A ++A+RR
Sbjct:  259 AKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRR 435          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 62/179 (34.64%), Postives = 104/179 (58.10%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV-SGDREVQRTMLELLNQLDGFSSDD----RIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A +   TF  ++   L   + G+  KLVR  F++A+  SP  IFIDEID+I ++R  SE     R V+  +L  ++ + G S +D     + V+AATN    +D AL R  RL+++I +P PS + R  +L+I  R++ +  DV+   +A + + ++GA +  VC +A ++A+RR
Sbjct:  259 AKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRR 435          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 62/175 (35.43%), Postives = 101/175 (57.71%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARI-LQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            +  A+Q+ ATF  ++   L   ++G+G K+VR  F +A+ + P +IFIDEID++ ++R D E    R ++    E L QLDG   SS+DRI V+ ATNR   +D A  R  RL +++ +P P   AR +I + + S++     D   E + + +D F+GA +  +C EA +  +R
Sbjct:  455 KCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIR 624          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 61/185 (32.97%), Postives = 107/185 (57.84%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 554
            A+A A +  +TF  ++   LV  ++G+  +LVR  F++A+E+ P IIFIDEID++   R + E    R ++    E L Q++G   D+  + V+ ATN    LD A+ R  R +++I +P P+  ARAR+ +++  K+       +F+ELA+ TD ++G+ +  V  +A M  +RR  T  + ++
Sbjct:  179 AKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSRRIK---TEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVRRIHTATHFKE 358          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 63/177 (35.59%), Postives = 101/177 (57.06%), Query Frame = 3
Query:    6 ARACAAQTN-ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A + N +TF  ++   LV  ++G+  KLV++ FQLA+E  P IIFIDEID++   R ++E    R ++    E L Q+ G   D D I V+ ATN   +LD A+ R  R +++I +P P   ARA + ++H         + +F+EL R TD ++GA +  +  +A M  +R+
Sbjct:  184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 63/176 (35.80%), Postives = 102/176 (57.95%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ-IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A AA++NATF  ++   L   ++G+G KLVR  F +A+E  P IIFIDE+D++  +R + E    R   R   E L + DG  S  DDR+ V+ ATNR   LD A++R  R  +++ +  P+EE R  +L+ +  ++ +        +LAR TD ++G+ L A+  +A +  +R
Sbjct:  389 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLRERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARLTDGYSGSDLTALAKDAALGPIR 559          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 61/176 (34.66%), Postives = 103/176 (58.52%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ-IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A AA++NATF  ++   L   ++G+G KLVR  F +A+E  P IIFIDE+D++  +R + E    R   R   E L + DG  S  DDR+ V+ ATNR   LD A++R  R  +++ +  P+EE R  +L+ + S++     +    +L+R T+ ++G+ + A+  +A +  +R
Sbjct:  379 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIR 549          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 61/176 (34.66%), Postives = 103/176 (58.52%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ-IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A AA++NATF  ++   L   ++G+G KLVR  F +A+E  P IIFIDE+D++  +R + E    R   R   E L + DG  S  DDR+ V+ ATNR   LD A++R  R  +++ +  P+EE R  +L+ + S++     +    +L+R T+ ++G+ + A+  +A +  +R
Sbjct:  376 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIR 546          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 63/176 (35.80%), Postives = 101/176 (57.39%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ-IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A A ++NATF  ++   L   ++G+G KLVR  F +A+E  P IIFIDEID++  +R + E    R   R   E L + DG  S  D+R+ V+ ATNR   LD A++R  R  ++I +  P+EE R ++L+ + S+           +LAR TD ++G+ L ++  +A +  +R
Sbjct:  345 AKAVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVARELQPSIIFIDEIDSLLCERREGEHDASR---RLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLR--RFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIR 515          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 70/207 (33.82%), Postives = 106/207 (51.21%), Query Frame = 3
Query:   54 GPQLVQMFIGDGAKLVRDAFQLAKEKSPC--------IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT----VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDAT-------------EVNHEDFNEGIIQVQAKKKAS 599
            GP+++  F+G+  K VRD F  A++            +I  DEIDAI   R  S   G       + +LL ++DG  + + + +I  TNR D+LD AL+R GRL+ ++E+  P E  R +ILQIH+ KM     +  D+N +ELA  T +++GA+L+ V   A   AL R  +             ++  EDF   I +VQ    AS
Sbjct:  284 GPEVLSKFVGETEKNVRDLFADAEQDQRTLGDASELHVIIFDEIDAICKSR-GSTRDGTGVHDSIVNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQELAARTKNYSGAELEGVVKSATSYALNRQLSMDDLTKPVEEENIKITMEDFLHAIYEVQPAFGAS 489          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
KTNA1_MACFA2.556e-2134.64Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN2.556e-2134.64Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
FIGL1_RAT2.556e-2135.43Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
VPS4_SCHPO3.338e-2132.97Suppressor protein of bem1/bed5 double mutants OS=... [more]
VPS4B_MOUSE3.338e-2135.59Vacuolar protein sorting-associated protein 4B OS=... [more]
SPAST_PIG3.338e-2135.80Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
SPAST_XENTR4.360e-2134.66Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
SPAST_XENLA4.360e-2134.66Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
SPAST_DANRE4.360e-2135.80Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
NSF_ARATH4.360e-2133.82Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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