CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 63/177 (35.59%), Postives = 100/177 (56.50%), Query Frame = 3
Query:    6 ARACAAQTN-ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A + N +TF  ++   LV  ++G+  KLV++ FQLA+E  P IIFIDEID++   R ++E    R ++    E L Q+ G   D D I V+ ATN   +LD A+ R  R +++I +P P   ARA + ++H         + +F EL R TD ++GA +  +  +A M  +R+
Sbjct:  184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 355          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 62/176 (35.23%), Postives = 102/176 (57.95%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ-IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A AA++NATF  ++   L   ++G+G KLVR  F +A+E  P IIFIDE+D++  +R + E    R   R   E L + DG  S  DDR+ V+ ATNR   LD A++R  R  +++ +  P+EE R  +L+ +  ++ +        +LAR T+ ++G+ L A+  +A +  +R
Sbjct:  390 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIR 560          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 64/181 (35.36%), Postives = 104/181 (57.46%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF----SSDD---RIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A +   TF  ++   L   + G+  KLVR  F++A+  +P  IFIDEID+I ++R  SE       +R   ELL Q+DG      +DD    + V+AATN    +D AL R  RL+++I +P PS + R  +L+I+ R++ +  DV+   +A   + ++GA +  VC +A ++A+RR
Sbjct:  260 AKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSE--EHEASRRVKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEKMEGYSGADITNVCRDASLMAMRR 436          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 61/175 (34.86%), Postives = 101/175 (57.71%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARIL-QIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            +  A+Q+ ATF  ++   L   ++G+G K+VR  F +A+ + P +IFIDEID++ ++R D E    R ++    E L QLDG   SS+DRI V+ ATNR   +D A  R  RL +++ +P P   AR +I+  + S++     D   + + + +D F+GA +  +C EA +  +R
Sbjct:  461 KCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGPIR 630          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.437e-21
Identity = 73/202 (36.14%), Postives = 111/202 (54.95%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM-LELLNQLDG--FSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT-----VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR-DATEVNHEDFNEGIIQVQA 584
            A+A A ++   F  ++   L   ++GD  K +R  FQ+A+   P IIFIDEID+I  +R +     D EV R M  E L Q DG   S+DDRI VI ATNR   LD A++R  R  ++I L  P EEAR  ++    +K       +  D+ +  +A +T  F+ + L A+C EA M+ +R  D ++++  D  E I +++A
Sbjct:  289 AKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEK----DAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRY--IASNTSGFSNSDLVALCKEAAMVPIREIDRSKLSMTD-GEKIRKIRA 481          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 7.437e-21
Identity = 65/201 (32.34%), Postives = 115/201 (57.21%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS-SDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ------IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--DATEVNHEDFNEGIIQVQ 581
            A+A A +   TF  ++   +V  + GD  KLVR  F+LA+  +P  IF+DE++++ ++R  +         R   ELL Q+DG + S+D + V+AA+N    LD A++R  RL+++I +  PS EAR  ++         SR + +H ++ +  L++ T+ ++G+ +K VC EA M  +R+  DA E NH+  +  + ++Q
Sbjct:  304 AKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVRKIFDALE-NHQSESSDLPRIQ 501          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 63/177 (35.59%), Postives = 100/177 (56.50%), Query Frame = 3
Query:    6 ARACAAQTN-ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A + N +TF  ++   LV  ++G+  KLV++ FQLA+E  P IIFIDEID++   R ++E    R ++    E L Q+ G   D D I V+ ATN   +LD A+ R  R +++I +P P   ARA + ++H         + +F EL R TD ++GA +  +  +A M  +R+
Sbjct:  184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMRGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 355          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 65/182 (35.71%), Postives = 107/182 (58.79%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREV-QRTMLELLNQLDGFSS---DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE 539
            ARA A+++++TF  ++   L   + GD  K+VR  F+LA+  +P IIFIDEID +G +R +   SG+ E  +R   E L Q+DG  +     R+ V+AATN    LD AL R  R +++I +P P  +AR ++++          ++N+++LA  T+ F+GA + ++C  A +  LRR  T+
Sbjct:  243 ARAIASESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGN---SGEHEASRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRR--RFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVLRRYDTK 419          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 62/181 (34.25%), Postives = 107/181 (59.12%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SSDDR-----IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A +   TF  ++   L   + G+  KLVR  F++A+  +P  IFIDEID++ ++R  SE       +R   ELL Q+DG   +SD+      + V+AATN    +D AL R  RL+++I +P PS + R  +L+I+ +++ +  DV+  ++A  ++ ++GA +  VC +A ++A+RR
Sbjct:  254 AKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTTIFIDEIDSMCSRRGTSE--EHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDASLMAMRR 430          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.269e-20
Identity = 69/216 (31.94%), Postives = 109/216 (50.46%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALRRDATE------------VNHEDFNEGIIQV-QAKKKASLNYY 611
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R  SE    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P E+ R  +L    +K     D      LA+ TD ++G+ L A   +A +  +R    E            +  +DF+  + ++ ++    SLN Y
Sbjct:  533 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTARPKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSY 746          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
VPS4B_HUMAN5.694e-2135.59Vacuolar protein sorting-associated protein 4B OS=... [more]
SPAST_BOVIN5.694e-2135.23Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
KTNA1_CHICK5.694e-2135.36Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
FIGL1_MOUSE5.694e-2134.86Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
SPAST_CAEEL7.437e-2136.14Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
KATL2_HUMAN7.437e-2132.34Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
VPS4B_PONAB9.713e-2135.59Vacuolar protein sorting-associated protein 4B OS=... [more]
MEI1_CAEEL9.713e-2135.71Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
KTNA1_SALSA9.713e-2134.25Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
SPAST_DROSI1.269e-2031.94Spastin OS=Drosophila simulans GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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