CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.269e-20
Identity = 60/174 (34.48%), Postives = 98/174 (56.32%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKS---PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAL 521
            +A A +  A  + L+GP +     G+  + +R  F+ A+E +   P ++FIDE+DA+  KR  S  + +    R + +LL  +DG  SD+++  +AAT+R D +DPAL R GR DR++ +  P+ + R  IL++    M    DV+   LA  T  + GA L A+C +A M A+
Sbjct:  243 KAVAREVGAYVIGLSGPAIHGSRPGESEENLRKIFEKAREAACSGPALLFIDEVDALCPKRGHSNSAPEN---RVVAQLLTLMDGIDSDNKMVTVAATSRPDAIDPALRRPGRFDREVIIGTPTHKQRQAILEMMISNMPTDRDVDAAALADVTVGYVGADLTALCRDAAMQAV 413          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 60/174 (34.48%), Postives = 95/174 (54.60%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALR 524
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R  +E    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P E+ R  +L    +K     D      LA+ T+ ++G+ L A+  +A +  +R
Sbjct:  552 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITEGYSGSDLTALAKDAALEPIR 723          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 60/174 (34.48%), Postives = 95/174 (54.60%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALR 524
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R   E    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P E+ R  +L    +K     D +    L++ TD ++G+ L A+  +A +  +R
Sbjct:  563 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIR 734          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 60/174 (34.48%), Postives = 95/174 (54.60%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALR 524
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R   E    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P E+ R  +L    +K     D +    L++ TD ++G+ L A+  +A +  +R
Sbjct:  563 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIR 734          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 66/190 (34.74%), Postives = 107/190 (56.32%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF----SSDD---RIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 554
            A+A A +   TF  ++   L   + G+  KLVR  F++A+  +P  IFIDEID+I  +R  S+       +R   ELL Q+DG      S+D    + V+AATN    +D AL R  RL+++I +P P+ + RA +L+I+ R++ V  DV+    A   + ++GA +  VC +A M+A+RR    ++ E+
Sbjct:  256 AKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRRGTSD--EHEASRRVKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRRRIQGLSPEE 441          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 67/183 (36.61%), Postives = 101/183 (55.19%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFS--------SDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A +   TF  ++   L   + G+  ++VR  F LA+  +P  IFIDEID++   R  S   G+ E  R +  ELL Q+DG S        S   + V+AATN    +D AL R  RL+++I +P P  E+R  ++ I+ R + V  DVN E++AR T+ ++G  L  VC +A M  +RR
Sbjct:  289 AKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGGS---GEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRR 466          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.826e-20
Identity = 67/191 (35.08%), Postives = 100/191 (52.36%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ---IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 563
            A+A A ++  TF  ++   L   ++GDG KLVR  F +A    P IIFIDEID++ T+R  +E    R   R   E+L Q DG   + D+R+ V+ ATNR + LD A +R  RL ++I +  P  E R +I+Q   +  R       +N   LA  T  ++G  L A+C +A    +RR    +   + NE
Sbjct:  434 AKAVAYESKVTFFSISSSSLTSKYVGDGEKLVRALFAVATHFQPSIIFIDEIDSLLTERSSNESEASR---RLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALR--RLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQQIN--SLAEVTQGYSGFDLAALCKDAAYEPIRRLGIGIKDLELNE 617          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 98.9821 bits (245), Expect = 2.826e-20
Identity = 61/185 (32.97%), Postives = 103/185 (55.68%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARIL-QIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR-DATEVNHED 554
            ARA A + +ATF  ++   L   ++GDG KLVR  F +A+E  P IIFIDE+D++ ++R  +E    R ++   L   + L   S  DRI V+AATNR   LD A +R  R  +++ +  P  + R  +L ++  ++ +   D +   LA+ T+ ++G+ L A+  +A +  +R  +  EV + D
Sbjct:  553 ARAVATECSATFFSISAATLTSKYVGDGEKLVRALFAVARELQPSIIFIDEVDSVLSERSSNEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALR--RFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADLAHLAQLTEGYSGSDLTALARDAALEPIRELNVEEVKNMD 735          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.820e-20
Identity = 60/174 (34.48%), Postives = 94/174 (54.02%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALR 524
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R  +E    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P  + R  +L    +K     D      LA+ TD ++G+ L A+  +A +  +R
Sbjct:  544 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPGVQTRELLLSRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIR 715          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.820e-20
Identity = 66/188 (35.11%), Postives = 107/188 (56.91%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLA-GPQLVQMFIGDGAKLVRDAFQLAKEKSPC--------IIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            AR      NA   K+  GPQ++  ++G+    VR  F  A+E+           II  DEIDAI  +R    V+G+  V  T++ +LL ++DG    + I VI  TNR D++D AL+R GRL+ ++E+  P+E+ R +IL IH+++M     ++ DV+ +E+A  T +F+GA+L+ +   A   A+ R
Sbjct:  270 ARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKQR--GSVAGNSGVHDTVVNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSGAELEGLVRAAQSSAMNR 455          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
SPA5L_XENTR1.269e-2034.48Spermatogenesis-associated protein 5-like protein ... [more]
SPAST_DROWI1.657e-2034.48Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]
SPAST_DROPS1.657e-2034.48Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_DROPE1.657e-2034.48Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
KATL1_DANRE1.657e-2034.74Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KTNA1_ARATH2.164e-2036.61Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
SPAST_DICDI2.826e-2035.08Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
SPAST_ANOGA2.826e-2032.97Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
SPAST_DROVI4.820e-2034.48Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
NSF1_DROME4.820e-2035.11Vesicle-fusing ATPase 1 OS=Drosophila melanogaster... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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