CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 64/199 (32.16%), Postives = 106/199 (53.27%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS------------DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARA-RILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 563
            A+A A ++N+TF  ++   L+  ++G+  KLVR  F +AK+ SP IIFIDEID++ T R D+E    R ++    ELL Q    SS            D R+ V+ ATN    +D A  R  R  RK+ +P P  E R   + ++ +++     D+++E +   T+ F+G+ L ++  EA M  +R    ++   DF++
Sbjct:  521 AKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSRRIK---TELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARR--RFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEPIRDLGDKLMFADFDK 714          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 60/174 (34.48%), Postives = 94/174 (54.02%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALR 524
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R  +E    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P  + R  +L    +K     D      LA+ TD ++G+ L A+  +A +  +R
Sbjct:  540 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPEVQTRELLLSRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIR 711          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 66/179 (36.87%), Postives = 98/179 (54.75%), Query Frame = 3
Query:    6 ARACAAQTNAT-FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEE---LARSTDDFNGAQLKAVCVEAGMLALR 524
            ARA A +  +T FL ++   L   ++GD  K+VR  FQ+A+   P IIFIDEID+I  +R + E    R   R   E L Q+DG   S DDR+ VI ATNR + LD A++R  R  ++I +  P+  AR +++     K     D+   +   LA  T  ++ + L A+C EA M+ +R
Sbjct:  228 ARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTIIFIDEIDSILCERNEKETEVSR---RMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILR--RFPKRILIDVPNAAARLKLIMSLLEKTKTSFDLGLTQRQILAEWTHGYSNSDLVALCREAAMVPIR 401          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: ATD2B_HUMAN (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 61/164 (37.20%), Postives = 83/164 (50.61%), Query Frame = 3
Query:   39 FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH-PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            F    G   +  ++G+  + +R  F  A    P IIF DEID +   R   +      +  T+L L+   DG  +   I VI ATNR D +DPAL R GR DR+     P ++AR  ILQIH+R       D    ELA     + GA +KA+C EA ++ALRR
Sbjct:  467 FFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALM---DGLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQKARKHILQIHTRDWNPKLSDAFLGELAEKCVGYCGADIKALCTEAALIALRR 627          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 60/177 (33.90%), Postives = 100/177 (56.50%), Query Frame = 3
Query:    6 ARACAAQTN-ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A + N +TF  ++   LV  ++G+  KLV++ FQLA+E  P IIFIDEID++   R ++E    R ++    E L Q+ G   D D I V+ ATN   +LD A+ R  R +++I +P P   ARA + ++H         + +F +L + T+ ++GA +  +  +A M  +R+
Sbjct:  184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPVRK 355          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 60/175 (34.29%), Postives = 97/175 (55.43%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARI-LQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            +  A Q+ ATF  ++   L   ++G+G K+VR  F +A+   P +IFIDEID++ ++R + E    R ++    E L QLDG   SSDDRI V+ ATNR   +D A  R  RL +++ +P P   AR +I + + +++     +   E +    D F+GA +  +C EA +  +R
Sbjct:  434 KCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEGEHESSRRIK---TEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSGADMTQLCREAALGPIR 603          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 60/178 (33.71%), Postives = 105/178 (58.99%), Query Frame = 3
Query:    6 ARACAAQTN-ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH--PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A + N +TF  ++   L+  ++G+  KLV++ F+LA++  P IIFIDE+D++   R ++E    R ++    E L Q+ G  +++D   V+ ATN   +LD A+ R  R +++I +P P E ARA++ ++H    T H   D N  ELAR T+ ++GA +  +  ++ M  +R+
Sbjct:  177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIK---TEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGS-TPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 60/178 (33.71%), Postives = 105/178 (58.99%), Query Frame = 3
Query:    6 ARACAAQTN-ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH--PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A + N +TF  ++   L+  ++G+  KLV++ F+LA++  P IIFIDE+D++   R ++E    R ++    E L Q+ G  +++D   V+ ATN   +LD A+ R  R +++I +P P E ARA++ ++H    T H   D N  ELAR T+ ++GA +  +  ++ M  +R+
Sbjct:  177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIK---TEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGS-TPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 60/178 (33.71%), Postives = 105/178 (58.99%), Query Frame = 3
Query:    6 ARACAAQTN-ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF-SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH--PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            A+A A + N +TF  ++   L+  ++G+  KLV++ F+LA++  P IIFIDE+D++   R ++E    R ++    E L Q+ G  +++D   V+ ATN   +LD A+ R  R +++I +P P E ARA++ ++H    T H   D N  ELAR T+ ++GA +  +  ++ M  +R+
Sbjct:  177 AKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIK---TEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGS-TPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 66/188 (35.11%), Postives = 104/188 (55.32%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLA-GPQLVQMFIGDGAKLVRDAFQLAKEKSPC--------IIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            AR      NA   K+  GP+++  ++G+    +R  F  A+E+           II  DEIDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ K+E+  P E+ R +IL IH+ +M  H     DV+ +ELA  T +F+GA+L+ +   A   A+ R
Sbjct:  270 ARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAMETKNFSGAELEGLVRAAQSTAMNR 455          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
TBP6_YEAST6.296e-2032.16Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
SPAST_DROMO6.296e-2034.48Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
SPAST_BRUMA6.296e-2036.87Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
ATD2B_HUMAN6.296e-2037.20ATPase family AAA domain-containing protein 2B OS=... [more]
VPS4B_BOVIN8.222e-2033.90Vacuolar protein sorting-associated protein 4B OS=... [more]
FIGL1_XENTR8.222e-2034.29Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
VPS4A_RAT1.074e-1933.71Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE1.074e-1933.71Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN1.074e-1933.71Vacuolar protein sorting-associated protein 4A OS=... [more]
NSF_PONAB1.074e-1935.11Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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