CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 60/175 (34.29%), Postives = 97/175 (55.43%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG--FSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARI-LQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            +  A Q+ ATF  ++   L   ++G+G K+VR  F +A+   P +IFIDEID++ ++R + E    R ++    E L QLDG   SS+DRI V+ ATNR   +D A  R  RL +++ +P P   AR +I + + S++     +   E +    D F+GA +  +C EA +  +R
Sbjct:  433 KCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIR 602          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.403e-19
Identity = 66/179 (36.87%), Postives = 98/179 (54.75%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM-LELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEE---LARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A A ++   F  ++   L   ++GD  K +R  FQ+A+   P IIFIDEID+I  +R +     D EV R M  E L Q DG +S  DDRI VI ATNR   LD A++R  R  ++I L  P  EAR  ++    +K  +   ++  +   +A +T  F+ + L A+C EA M+ +R
Sbjct:  319 AKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCERSEK----DAEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLR--RFPKRIMLNLPDTEARKELITNTLKKHDMMDGLSSSDIRYIASNTSGFSNSDLVALCKEAAMVPVR 491          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 66/188 (35.11%), Postives = 104/188 (55.32%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLA-GPQLVQMFIGDGAKLVRDAFQLAKEKSPC--------IIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            AR      NA   K+  GP+++  ++G+    +R  F  A+E+           II  DEIDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ K+E+  P E+ R +IL IH+ +M  H     DV+ +ELA  T +F+GA+L+ +   A   A+ R
Sbjct:  270 ARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNR 455          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 66/188 (35.11%), Postives = 104/188 (55.32%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLA-GPQLVQMFIGDGAKLVRDAFQLAKEKSPC--------IIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            AR      NA   K+  GP+++  ++G+    +R  F  A+E+           II  DEIDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ K+E+  P E+ R +IL IH+ +M  H     DV+ +ELA  T +F+GA+L+ +   A   A+ R
Sbjct:  270 ARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNR 455          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 66/188 (35.11%), Postives = 104/188 (55.32%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLA-GPQLVQMFIGDGAKLVRDAFQLAKEKSPC--------IIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            AR      NA   K+  GP+++  ++G+    +R  F  A+E+           II  DEIDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ K+E+  P E+ R +IL IH+ +M  H     DV+ +ELA  T +F+GA+L+ +   A   A+ R
Sbjct:  270 ARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNR 455          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 66/188 (35.11%), Postives = 104/188 (55.32%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLA-GPQLVQMFIGDGAKLVRDAFQLAKEKSPC--------IIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH----PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            AR      NA   K+  GP+++  ++G+    +R  F  A+E+           II  DEIDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ K+E+  P E+ R +IL IH+ +M  H     DV+ +ELA  T +F+GA+L+ +   A   A+ R
Sbjct:  270 ARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNR 455          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.392e-19
Identity = 59/174 (33.91%), Postives = 95/174 (54.60%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVN-FEELARSTDDFNGAQLKAVCVEAGMLALR 524
            ARA A + +ATFL ++   L   ++GDG KLVR  F +A+   P IIFIDE+D++ ++R  +E    R ++   L   + L G    DRI V+AATNR   LD A +R  R  +++ +  P  + R  +L    +K     D +    LA+ T+ ++G+ L A+  +A +  +R
Sbjct:  557 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEPIR 728          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.392e-19
Identity = 65/188 (34.57%), Postives = 107/188 (56.91%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLA-GPQLVQMFIGDGAKLVRDAFQLAKEK-SPC-------IIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            AR      NA   K+  GPQ++  ++G+    VR  F  A+E+   C       II  DEIDAI  +R    ++G   V  T++ +LL+++DG    + I VI  TNR D++D AL+R GRL+ ++E+  P E  R +IL+IH+ +M     + P+V+ E++++ T +F+GA+L+ +   A   A+ R
Sbjct:  347 ARQIGKMLNAREPKIVNGPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICKQR--GSMAGSSSVHDTVVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLVRAAQSSAMNR 532          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.392e-19
Identity = 65/188 (34.57%), Postives = 104/188 (55.32%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLA-GPQLVQMFIGDGAKLVRDAFQLAKEKSPC--------IIFIDEIDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            AR      NA   K+  GPQ++  ++G+    +R  F  A+E+           II  DEIDAI   R    V+G+  V  T++ +LL ++DG    + I VI  TNR D++D AL+R GRL+ ++E+  P+E+ R +IL IH+++M     +  DV+  E+A  T +F+GA+L+ +   A   A+ R
Sbjct:  275 ARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKAR--GSVAGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAAQSTAMNR 460          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 53/170 (31.18%), Postives = 95/170 (55.88%), Query Frame = 3
Query:   54 GPQLVQMFIGDGAKLVRDAFQLAKEKSPC--------IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT----VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            GP+++  ++G   + +R+ F+ A+ +           +I  DE+D++  +R   +  G       + +LL+++DG    + I VI  TNR D++D AL+R GR + +IE+  P E+ R  I  IH++K+T    +  DVNF+EL+  T +F GA+++ +C  A   A+ R
Sbjct:  344 GPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGSGKSDGTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLPDEKGRKDIFLIHTKKLTENGILSSDVNFDELSTLTKNFTGAEIEGLCNSAKSYAISR 513          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
FIGL1_XENLA1.074e-1934.29Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]
SPAST_CAEBR1.403e-1936.87Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
NSF_RAT1.832e-1935.11Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_MOUSE1.832e-1935.11Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN1.832e-1935.11Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR1.832e-1935.11Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
SPAST_DROGR2.392e-1933.91Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
NSF_CAEEL2.392e-1934.57Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
NSF2_DROME2.392e-1934.57Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
SEC18_CANAL3.124e-1931.18Vesicular-fusion protein SEC18 OS=Candida albicans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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