CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 52/132 (39.39%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  168 IGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 563
            +G +R      G  E ++T+ ++L ++DGFS +D + VIAATNR D+LDPAL R GR DR++ +  P  + R +IL++H RK++V  DV+   LAR T  ++GA L  +  EA + A R +   V   +F +
Sbjct:    1 MGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEK 132          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 64/176 (36.36%), Postives = 97/176 (55.11%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDD--RIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDV-NFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A++ A+Q  A F  +    L   ++GD  KLV+  F +A    P IIFIDE+D++ +KR  +E   +    R   E L  LDG +S++  R+ VI ATNR   LD A+ R  R  R++ +P P+ EAR +I++    ++  + DV    ELA  TD ++GA +  +C  A M  LR
Sbjct:  300 AKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANE---NESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLR 470          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: TBP7_CAEEL (TAT-binding homolog 7 OS=Caenorhabditis elegans GN=lex-1 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 60/176 (34.09%), Postives = 85/176 (48.30%), Query Frame = 3
Query:    6 ARACAAQTN-ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDV--NFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A  C    N   F    G   +  ++G+  + +R  F  A    P IIF DEID +   R   +      +  T+L L++ LDG      + VI ATNR D LDPAL R GR DR++    P   AR +IL IH+ K   +  +    + +A  T  + GA LK +C EA ++ LR
Sbjct:  446 ANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHASIVSTLLALMDGLDGRGE---VVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTEAVLIGLR 618          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SPAST_IXOSC (Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 59/179 (32.96%), Postives = 101/179 (56.42%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARA----RILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A A ++N+TFL ++   L   ++G+G KLVR  F +A+E  P IIFIDE+D++ ++R D+E    R   R   E L + DG    S++R+ V+ ATNR   LD A +R  R  +++ +  P    R     ++L+ H+  ++       + LAR T+ ++G+ L A+  +A +  +R
Sbjct:  424 AKAVAHESNSTFLNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLSERKDNEHEATR---RLKTEFLVEFDGLHTGSEERVLVMGATNRPQELDDAALR--RFTKRVYVTLPDHNTRVILLEKLLKKHNNPLSAD---KLKYLARLTEGYSGSDLTALAKDAALGPIR 594          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 70/222 (31.53%), Postives = 119/222 (53.60%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQ-RTMLELLNQLDGFS-SDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ------IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--DATEVNHEDFNE--GIIQVQAKKKASLNYYA*THPKAK 635
            A+A A +   TF  ++   +V  + GD  KLVR  F+LA+  +P  IF+DE++++ ++R      G+ E   R   ELL Q+DG + S+D + V+AA+N    LD A++R  RL+++I +  PS+EAR  ++         +  + +H  + +  L++ T+ ++G+ +K VC EA M  +R+     E N  + N   GI       +  L+  A T P AK
Sbjct:  305 AKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR-GMVPGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIKLVCREAAMRPVRKIFSVLENNQSESNNLPGIQLDTVTTQDFLDVLAHTKPSAK 523          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 71/220 (32.27%), Postives = 108/220 (49.09%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLA-GPQLVQMFIGDGAKLVRDAFQLAK--------EKSPCIIFIDEIDAIGTKRFDSEVSGDREV-QRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMT----VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--------------DATEVNHEDFNEGIIQVQ 581
            AR      NA   K+  GP+++  ++G   + VR  F  A+        E    II  DE+DAI  KR  S   GD  V  + + +LL ++DG    + I VI  TNR D++D AL+R GRL+  +E+  P E  R +IL+IH+ +M     +  DV+ EELA  T +F+GA++  +   A   A  R              +  +VN  DF   + +V+
Sbjct:  321 ARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGSS--GGDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSASSFAFYRHIKVGTTAAVSGNLENIKVNRNDFLNALSEVR 538          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: MPA_MYCTU (Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 58/167 (34.73%), Postives = 97/167 (58.08%), Query Frame = 3
Query:   18 AAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKS----PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEA 506
            A +  + FL + GP+L+  F+G+  + +R  FQ A+EK+    P I+F DE+D+I   R  + VS D E    + +LL+++DG    + + VI A+NR D++DPA++R GRLD KI++  P  EA      I+S+ +T    V+ ++LA    D      ++ C++A
Sbjct:  322 AHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR-GTGVSSDVETT-VVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQ---DIYSKYLTEFLPVHADDLAEFDGD------RSACIKA 477          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 58/167 (34.73%), Postives = 96/167 (57.49%), Query Frame = 3
Query:   18 AAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKS----PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEA 506
            A +  + FL + GP+L+  F+G+  + +R  FQ A+EK+    P I+F DE+D+I   R  + VS D E    + +LL+++DG    + + VI A+NR D++DPA++R GRLD KI++  P  EA      I+S+ +T    V+ ++L     D      +A C++A
Sbjct:  322 AREAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR-GTGVSSDVETT-VVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQ---DIYSKYLTESLPVHADDLTEFDGD------RAACIKA 477          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: MPA_MYCBO (Proteasome-associated ATPase OS=Mycobacterium bovis GN=mpa PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 58/167 (34.73%), Postives = 97/167 (58.08%), Query Frame = 3
Query:   18 AAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKS----PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEA 506
            A +  + FL + GP+L+  F+G+  + +R  FQ A+EK+    P I+F DE+D+I   R  + VS D E    + +LL+++DG    + + VI A+NR D++DPA++R GRLD KI++  P  EA      I+S+ +T    V+ ++LA    D      ++ C++A
Sbjct:  322 AHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR-GTGVSSDVETT-VVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQ---DIYSKYLTEFLPVHADDLAEFDGD------RSACIKA 477          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.455e-18
Identity = 57/175 (32.57%), Postives = 103/175 (58.86%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A A + ++TF  ++   +V  ++GD  KLV+  F++A+EK+  +IFIDE+D++ + R D E    R ++    E L Q++G  +D D I V+AATN    LD A+ R  R +++I +  P  +ARA++ QIH           ++++LA  T+ ++G+ + ++  +A M  +R
Sbjct:  185 AKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSRNDQESESARRIK---TEFLIQMNGVGNDSDGILVLAATNIPWGLDLAIRR--RFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAIMQPVR 354          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
FTSH2_HAEIN3.124e-1939.39Cell division protease ftsH homolog 2 OS=Haemophil... [more]
FIGL1_DROME4.081e-1936.36Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
TBP7_CAEEL5.330e-1934.09TAT-binding homolog 7 OS=Caenorhabditis elegans GN... [more]
SPAST_IXOSC5.330e-1932.96Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1[more]
KATL2_MOUSE6.961e-1931.53Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
SEC18_SCHPO2.645e-1832.27Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
MPA_MYCTU2.645e-1834.73Proteasome-associated ATPase OS=Mycobacterium tube... [more]
MPA_MYCLE2.645e-1834.73Proteasome-associated ATPase OS=Mycobacterium lepr... [more]
MPA_MYCBO2.645e-1834.73Proteasome-associated ATPase OS=Mycobacterium bovi... [more]
VPS4_DICDI3.455e-1832.57Vacuolar protein sorting-associated protein 4 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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