CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: TBP7_CAEBR (TAT-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 59/176 (33.52%), Postives = 83/176 (47.16%), Query Frame = 3
Query:    6 ARACAAQTN-ATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDV--NFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A  C    N   F    G   +  ++G+  + +R  F  A    P IIF DEID +   R   +      +  T+L L++ LDG      + VI ATNR D LDPAL R GR DR++    P   AR  IL IH+ K   +       + +A  T  + GA LK +C E+ ++ LR
Sbjct:  460 ANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHASIVSTLLALMDGLDGRGE---VVVIGATNRLDSLDPALRRPGRFDRELRFSLPDLNARRHILDIHTSKWEENKPTPETLDGIAEKTSGYCGADLKFLCTESVLIGLR 632          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 58/185 (31.35%), Postives = 100/185 (54.05%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIH-SRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 554
            A+A A + N+TF  ++   LV  ++G+  KLV+  F +A+E  P IIFIDE+DA+   R + E    R ++    ELL Q++G  +D + + V+ ATN    LD A+ R  R +R+I +P P   AR  + +I+      V    ++  L   T+ ++G+ +  V  +A M  +R+  +  + +D
Sbjct:  183 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 362          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SEC18_YEAST (Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae GN=SEC18 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.313e-17
Identity = 62/202 (30.69%), Postives = 105/202 (51.98%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLA-GPQLVQMFIGDGAKLVRDAFQLAK--------EKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR------RDATEVNHED 554
            AR      NA   K+  GP+++  ++G   + +R+ F+ A+        E S  II  DE+D++  +R  S   G       + +LL ++DG    + I VI  TNR D++D AL+R GR + ++E+  P E+ R +I  I ++KM     +  DVN  ELA  T +F+GA+++ +   A   A+       + AT++N +D
Sbjct:  291 ARKIGTMLNAKEPKIVNGPEILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFDELDSVFKQR-GSRGDGTGVGDNVVNQLLAKMDGVDQLNNILVIGMTNRKDLIDSALLRPGRFEVQVEIHLPDEKGRLQIFDIQTKKMRENNMMSDDVNLAELAALTKNFSGAEIEGLVKSASSFAINKTVNIGKGATKLNTKD 491          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 59/158 (37.34%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   39 FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKS----PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCV 500
            FL + GP+L+  F+G+  + +R  FQ A+EK+    P I+F DE+D+I   R  S VS D E    + +LL+++DG    + + VI A+NR D++DPA++R GRLD KI++  P  E+      I S+ +     +N ++LA    D   A LKA+ V
Sbjct:  311 FLNIKGPELLNKFVGETERHIRMIFQRAREKASEGTPVIVFFDEMDSIFRTR-GSGVSSDVETT-VVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAESAQ---DIFSKYLVDGLPINADDLAEFGGD-RTACLKAMIV 462          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 62/193 (32.12%), Postives = 95/193 (49.22%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM-LELLNQLDGFSSDDRIKVI--AATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 575
            A+A A +    F+ L    L   + G+  KL    F LA +  P IIFIDEID+    R     S D E    M  + ++  DG  +D   +VI   ATNR   LD A+MR  R+  +  +  P+ + R  IL++  +   V   V+  E+A+ TD F+G+ LK +C +A +L +R      + E  +E  I+
Sbjct:  143 AKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIR 329          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 62/193 (32.12%), Postives = 95/193 (49.22%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM-LELLNQLDGFSSDDRIKVI--AATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 575
            A+A A +    F+ L    L   + G+  KL    F LA +  P IIFIDEID+    R     S D E    M  + ++  DG  +D   +VI   ATNR   LD A+MR  R+  +  +  P+ + R  IL++  +   V   V+  E+A+ TD F+G+ LK +C +A +L +R      + E  +E  I+
Sbjct:  143 AKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIR 329          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 62/193 (32.12%), Postives = 95/193 (49.22%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM-LELLNQLDGFSSDDRIKVI--AATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQ 575
            A+A A +    F+ L    L   + G+  KL    F LA +  P IIFIDEID+    R     S D E    M  + ++  DG  +D   +VI   ATNR   LD A+MR  R+  +  +  P+ + R  IL++  +   V   V+  E+A+ TD F+G+ LK +C +A +L +R      + E  +E  I+
Sbjct:  143 AKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIR 329          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 56/192 (29.17%), Postives = 96/192 (50.00%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG---------FSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 554
            AR  A ++   F+  +G +         AK + + F +A+  +P  +F+DEIDAI  +        D   + T   L+ QLDG         FS    +  I ATNR D LD   +RSGR+DR++ +  P  + R +I  +HS    +  D++F +L   T  F+GA ++ +  EA ++++R+  + +  +D
Sbjct:  543 ARTLAKESGLPFVFASGAEFTDSEKSGAAK-INEMFSIARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGRSYIYQQD 729          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 60/182 (32.97%), Postives = 95/182 (52.20%), Query Frame = 3
Query:   48 LAGPQLVQMFIGDGAKLVRDAFQLAKEKSPC--------IIFIDEIDAI----GTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN 545
            ++GP ++  ++G   + +R  F+ A+ +           II  DE+DAI    G+++ DS V GD  V     +LL  +DG  S + I VI  TNR D++D AL+R GRL+  +E+  P E  R +I +IH+ KM     +  DVN    A +T +++GA+++ V   A   A  R     N
Sbjct:  289 VSGPSILNKYVGQSEENIRMLFRDAEIEQKAKGDDSGLHIIIFDELDAICKSRGSRQGDSGV-GDSVVN----QLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYAFSRQVDTKN 465          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.509e-17
Identity = 56/175 (32.00%), Postives = 95/175 (54.29%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM-LELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPD-VNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A A ++ A F+ +    ++  + G+  K+V   F LA +  PCIIFIDEID+   +R     S D EV  T+  E +   DG  ++ R+ +I ATNR + +D A +R  RL ++  +  P  + R +IL +  +   +  D  + + +A +T  F+G+ LK +C EA + A +
Sbjct:  143 AKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSFLRER----SSTDHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLR--RLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAALDAAK 311          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
TBP7_CAEBR4.512e-1833.52TAT-binding homolog 7 OS=Caenorhabditis briggsae G... [more]
VPS4_YEAST7.696e-1831.35Vacuolar protein sorting-associated protein 4 OS=S... [more]
SEC18_YEAST1.313e-1730.69Vesicular-fusion protein SEC18 OS=Saccharomyces ce... [more]
MPA_RHOER2.239e-1737.34Proteasome-associated ATPase OS=Rhodococcus erythr... [more]
ATAD1_RAT2.239e-1732.12ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE2.239e-1732.12ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN2.239e-1732.12ATPase family AAA domain-containing protein 1 OS=H... [more]
FTSHC_ARATH2.924e-1729.17Cell division protease ftsH homolog 12, chloroplas... [more]
NSF_DICDI4.988e-1732.97Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
MSP1_YEAST8.509e-1732.00Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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