CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.451e-16
Identity = 55/175 (31.43%), Postives = 97/175 (55.43%), Query Frame = 3
Query:   39 FLKLAGPQLVQMFIGDGAKLVRDAFQLAKE-------KSPC-IIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 527
            F  ++GP++   ++G     +R  F+ AK+       KSP  ++ IDEIDA+   R  S+ +  R+    + + L ++DG    + +  I  TNR ++LDPA +RSGR    I++  P +E R +I QIH++K+     +  DV+  +LA  T++F+GA ++ +   A + +L R
Sbjct:  634 FRLMSGPEIFNKWVGGSESNIRAIFKPAKDAWKKHGDKSPVYMVVIDEIDAMLPSRSGSDGNPVRD--SVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLAVITEEFSGADIEGMVELASVYSLER 806          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 64/204 (31.37%), Postives = 105/204 (51.47%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM-LELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 611
            A+A A      F+ L    L   + G+  KL    F +A++  P IIFIDEID+    R     S D E    M  + +   DGFSS  D+I V+ ATNR   +D A++R  R+  + ++P P+ + R++IL +  R   ++  VN  E+A++ +  +G+ LK VC  A  L  R  AT  +    N+ +   Q+  +++++ Y
Sbjct:  134 AKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDR----QSHDHESTAMMKAQFMTLWDGFSSSGDQIIVMGATNRPRDVDAAILR--RMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLA--LLARAKATVASGGSVNQLLPLEQSDFESAVHKY 329          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.223e-16
Identity = 52/168 (30.95%), Postives = 92/168 (54.76%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDG-FSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEA 506
            A+A A Q+ ATF+ ++   L   + G+  KLV   F LA++  P IIFIDEID    +R  ++     +++    E ++  DG  S   R+ V+ ATNR   +D A+ R  R+ +   +P P+ E R +IL+++ +K+ +  + ++  +  +T   +G+ +K VC  A
Sbjct:  142 AKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQRQRTDHEAMAQIK---AEFMSMWDGLLSGQSRVLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSA 304          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.515e-16
Identity = 56/192 (29.17%), Postives = 100/192 (52.08%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAI-GTKRFDSEVSGDREVQRTMLELLNQL-----------------DGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEAR-ARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            ARA A ++++TF  ++   L   ++G+  KLVR  F +AK+ SP IIF+DEID+I G++  ++E    R ++   L   + L                 +G   D R+ V+AATN    +D A  R  R  R+  +P P ++ R  +  ++ S +     + +F+EL + T+ ++G+ + ++  +A M  LR
Sbjct:  655 ARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKLSPSIIFVDEIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRVLVLAATNLPWSIDEAARR--RFVRRQYIPLPEDQTRHVQFKKLLSHQKHTLTESDFDELVKITEGYSGSDITSLAKDAAMGPLR 844          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS2_METTH (Putative 26S protease regulatory subunit homolog MTH_1011 OS=Methanobacterium thermoautotrophicum GN=MTH_1011 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.515e-16
Identity = 51/183 (27.87%), Postives = 94/183 (51.37%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGM-LALRRDATEVNHE 551
            A++ A +       +    L+   +GDGA+ + + ++LA + +P +IFIDE+DAIG  R    + GD  V   +  LL ++DG + +  +  I ATN  ++LD A+    R + +IE   P +E R  +L+ +   M +  D   ++L + T + +G  +K   ++  +  A+  D+  V  E
Sbjct:  174 AKSLANELKVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRYQSLRGD--VSEVVNALLTEMDGINQNWGVVTIGATNNPELLDKAI--RSRFEEEIEFKLPDDEERKLMLEKYIETMPLKVDFPVDKLVKLTREMSGRDIKDRVLKTALHRAIAEDSESVRAE 352          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.515e-16
Identity = 63/213 (29.58%), Postives = 101/213 (47.42%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTM-LELLNQLDGFSSDDRIKVI--AATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR----RDATE------VNHEDFNEGIIQVQAKKKASLN 605
            A+A A +    F+ L    L   + G+  KL    F LA +  P IIFIDEID+    R     S D E    M  + ++  DG  +D   +VI   ATNR   LD A++R  R+  +  +  P+   R  IL++      V   V   E+A+ TD F+G+ L+ +C +A +L +R    +++ E      +  ED    I +++  K A ++
Sbjct:  147 AKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLDSAILR--RMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAALLCVRDFVHQESPEEDFIRPIRQEDLQRAIEKMKKSKSAGVH 353          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.229e-15
Identity = 50/183 (27.32%), Postives = 94/183 (51.37%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGM-LALRRDATEVNHE 551
            A++ A +       +    L+   +GDGA+ + + ++LA + +P +IFIDE+DAIG  R    + GD  V   +  LL ++DG + +  +  I ATN  ++LD A+    R + +IE   P ++ R  +L+ +   M +  D + ++L + T   +G  +K   ++  +  AL  ++  V  E
Sbjct:  174 AKSLANELRVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRGD--VSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAI--RSRFEEEIEFKLPGDDERRMMLEKYIETMPLDVDFSVDKLVKLTKGMSGRDIKERVLKTALHRALADESPRVERE 352          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 60/183 (32.79%), Postives = 94/183 (51.37%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS--EVSGDREVQRTMLELLNQLDGFSSD------DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH--PDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            ARA A +  ATF  ++   L   ++GD  KLVR  F++AK ++  +IF+DEID+I + R DS  E    R ++   L   + L   + D       R+ V+AATN    +D A  R  R  ++  +P P +E R + L  H     VH   + + EEL   T+ ++G+ + A+  +A M  LR
Sbjct:  429 ARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDSGNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEAARR--RFVKRTYIPLPEKETRYKHLS-HLLHNQVHCLTEEDLEELVNLTEGYSGSDITALAKDAAMGPLR 608          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FIGN_MOUSE (Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 62/206 (30.10%), Postives = 106/206 (51.46%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARIL-QIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR-RDATE-----------VNHEDFNEGIIQVQ 581
            R  A+Q  ATF K+AG  LV  +IG+  K++  +F +A+ + P +IF+ +ID + + +   E S    V R   E L QLD    S++D+I VI AT++ + +D +L R     +++ +P P   AR +I+ Q+ ++      D  F  L + T+ F+G  +  +C EA +  L    AT+           V ++DF     ++Q
Sbjct:  537 RCIASQLGATFFKIAGSGLVAKWIGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVSEEHS---PVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQIIVQLLTQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAAVGPLHAMPATDLSAIMPSQLRPVTYQDFENAFCKIQ 737          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FIGN_HUMAN (Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 55/169 (32.54%), Postives = 94/169 (55.62%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARIL-QIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEA 506
            R  A+Q  ATF K+AG  LV  ++G+  K++  +F +A+ + P +IF+ +ID + + + + E S    V R   E L QLD    S++D+I VI AT++ + +D +L R     +++ +P P   AR +I+ Q+ S+      D  F  L + T+ F+G  +  +C EA
Sbjct:  537 RCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHS---PVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQIIVQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEA 700          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
YR476_MIMIV1.451e-1631.43Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]
MSP1_CAEEL3.233e-1631.37Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
YJNA_SCHPO4.223e-1630.95Uncharacterized AAA domain-containing protein C24B... [more]
SAP1_YEAST5.515e-1629.17Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 P... [more]
PRS2_METTH5.515e-1627.87Putative 26S protease regulatory subunit homolog M... [more]
ATD1B_DANRE5.515e-1629.58ATPase family AAA domain-containing protein 1-B OS... [more]
PRS2_METTM1.229e-1527.32Putative 26S protease regulatory subunit homolog M... [more]
SUR2_SCHPO2.096e-1532.79Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]
FIGN_MOUSE2.096e-1530.10Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1[more]
FIGN_HUMAN2.737e-1532.54Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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