CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:697..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.575e-15
Identity = 53/169 (31.36%), Postives = 94/169 (55.62%), Query Frame = 3
Query:    9 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARIL-QIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEA 506
            R  A+Q  A FL L+G  LV  ++G+G K+V+ +F +A+ + P ++FI ++D +      S++S +  V R   ELL QLDG   S ++ + V+ +T++ + +D +L R     +++ +P P   AR +I+ Q+ S+      D     L + TD F+G  +  +C EA
Sbjct:  515 RCMASQLGAAFLLLSGSALVTKWLGEGEKIVQASFLIARCRQPSVVFISDVDLL----LSSQLSEESPVNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRR--YFVKRLLVPLPDATARHQIISQLLSQHNYCLSDKEVTLLVQRTDGFSGLDVVRLCQEA 677          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 48/173 (27.75%), Postives = 85/173 (49.13%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A+A A  +   F+ L    L   + G+  KL    F LA +  PCIIF+DEID+    R   +      ++   + L + LD    + ++ V+ ATNR   +D A++R  R+     +  P+   R  IL++      +   +N +E+A  ++ ++G+ LK +C +A M  +R
Sbjct:  146 AKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDSFLRNRSSMDHEATAMMKAQFMSLWDGLD-TGENSQVMVMGATNRPQDVDAAILR--RMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMYRVR 315          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 56/186 (30.11%), Postives = 92/186 (49.46%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF---------SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARA----RILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            ARA A ++ + F  ++   L   F+G+  KLVR  F LAK+ SP IIF+DEID++ + R  S+ +     +R   E L Q             +   R+ V+AATN    +D A  R  R  R+  +P P E  R      +L+     +++    + E + ++T+ ++G+ L A+  +A M  LR
Sbjct:  509 ARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSAR-SSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLE---DIEAIVKATEYYSGSDLTALAKDAAMGPLR 688          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: YCF46_GRATL (Uncharacterized AAA domain-containing protein ycf46 OS=Gracilaria tenuistipitata var. liui GN=ycf46 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSG-DREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM--TVHPDVNFEELARSTDDFNGAQLKAVCVEA 506
            A+A + Q N   LKL   ++    +G   + +R   + A++ SPCI++IDEID   T+  +   SG +  V  TML  L++         + VIA  N+   L   L+R GR D    L  PS E R +I QIH  K         + + L++ TD F+GA+++   +EA
Sbjct:  277 AKAISGQWNLPLLKLDMGKIFASLVGQSEERMRHMIKTAEQSSPCILWIDEIDKCFTRLNNYTDSGTNGRVLSTMLTWLSE-----KKKPVFVIATANQVLSLPSELLRKGRFDEIFFLNLPSLEEREKIFQIHLMKFRPLSWRKYDIKYLSKLTDQFSGAEIEQAIIEA 441          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 60/226 (26.55%), Postives = 101/226 (44.69%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFD-----------------SEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK-MTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE------VNHEDFNEGIIQVQAKKKASLNY 608
            A+A + +    +L + G Q      G     V D F+  +  SPCI++IDEID+I  +R +                 S ++ D++   T+L + L  +DG+   + + +I ATNR + LD A+MR GR DR+I    P  E R  IL+I  R    +  D     +A  +   NG  L+ +     +L+      +      +N + F+  + +V   +    NY
Sbjct:  395 AKAMSYEAETPYLYVEGSQFRCREEGVANARVDDLFKQIQNISPCILYIDEIDSIAERREEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPPFFEERKDILRIFLRNTKALVDDTTKTMMAERSIGLNGCDLRLLADNILLLSALESRNQQKTIPVINEDTFDRALERVSRIRHIISNY 620          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: FTSH_OLTVI (Cell division protease ftsH homolog OS=Oltmannsiellopsis viridis GN=ftsH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 52/182 (28.57%), Postives = 91/182 (50.00%), Query Frame = 3
Query:   30 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKE------KSPCIIFIDEIDAIGTKRFDS-----EVSGDREVQRTMLE----LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 530
            N  + K +G QL  M  G  +  VR   +L KE       +         D + T+  +S     E S + EV++  L     LL ++DG +  + + V  ATNR ++LDPAL+R GR D+ + +  P ++ R  IL+++++K+     +++E  A  T   + A L A+  ++ +LA+  D
Sbjct: 1425 NCLYPKNSGQQL-SMTDGSKSSTVRTTTRLGKECPFPPHTTRSFGLDTNKDEMETRSSESTKASHESSNEMEVEKNQLSALIRLLVEMDGLNPLNGVIVFGATNRPEVLDPALIRPGRFDQILPIELPGKQKRVEILKLYAKKLGTAKSISWEYFANRTVGLSAADLAAIMNQSTILAVFND 1605          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: YCF46_GUITH (Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia theta GN=ycf46 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 51/178 (28.65%), Postives = 85/178 (47.75%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEID-AIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVH--PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 530
            A++ A + N   LKL   +L    IG+    VR   Q A+  SPCI++IDEID A     F+++    + V  T +  L++         + V+A  N  D L P L+R GR D    +  P  + R  I ++H +K+        + E L+  ++ F+GA+++    EA  +A   +
Sbjct:  292 AKSIANEWNLPLLKLDVGRLFGGIIGESEARVRQMIQFAETISPCILWIDEIDKAFTGSNFNNDSGTTKRVFGTFITWLSE-----KKSPVFVVATANNIDSLPPELLRKGRFDEVFFIGLPDLKERECIFKVHLKKIRPKSWSTYDTEILSAQSNRFSGAEIEESIYEAMHIAFNEN 464          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
FIGN_DANRE3.575e-1531.36Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
ATD1A_DANRE5.162e-1427.75ATPase family AAA domain-containing protein 1-A OS... [more]
YKX4_SCHPO2.562e-1330.11Uncharacterized AAA domain-containing protein C328... [more]
YCF46_GRATL4.370e-1332.35Uncharacterized AAA domain-containing protein ycf4... [more]
YCF2_MESVI7.454e-1326.55Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=... [more]
FTSH_OLTVI1.836e-1128.57Cell division protease ftsH homolog OS=Oltmannsiel... [more]
YCF46_GUITH4.090e-1128.65Uncharacterized AAA domain-containing protein ycf4... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
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