CN185593

Overview
NameCN185593
Unique NameCN185593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:697..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 1.390e-51
Identity = 105/204 (51.47%), Postives = 137/204 (67.16%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 608
            ARA A +T+A F+++ G +LVQ ++G+GA++VR+ F++A+ K  C+IF DEIDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  I +IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  226 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.390e-51
Identity = 99/196 (50.51%), Postives = 137/196 (69.90%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            ARA A+Q +  FLK+    +V  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQ+DGF +  R+K+I ATNR D LDPAL+R GRLDRKI +  P+E+AR  IL+IH+  +T H ++++E + + +D FNGA L  VC EAGM A+R D   V  EDF + + +V   KK
Sbjct:  184 ARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKK 379          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.370e-51
Identity = 102/188 (54.26%), Postives = 133/188 (70.74%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 569
            ARA A QT A FL++ G +LVQ +IG+GA+LVR+ F+LAK+KSP IIFIDEIDAIG  R +S  SGDREV RT+++LL ++DGFS+   +++I ATNR DILD AL+R GR DR IE+P P  E R  IL IH   M +   V+  ++A  TD  NGA L+++C+EAGM A+R D   V  EDF + I
Sbjct:  204 ARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELFELAKKKSPSIIFIDEIDAIGASRTESNTSGDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMFAIRSDHEMVTLEDFEQSI 391          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.370e-51
Identity = 100/184 (54.35%), Postives = 135/184 (73.37%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 557
            A+A A +T+A FL   G +LVQ +IG+GA+LVR+ F LAKEK+P I+FIDEIDAIG  R ++  SGDREVQRT+++LL  +DGF     +K+I ATNR DILD AL+R GR DR IE+P P  E R  IL++H+R M +  DV+  E+AR T+  NGA+L A+C+EAGM A+R++  +V+ EDF
Sbjct:  204 AKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDF 387          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.096e-51
Identity = 102/195 (52.31%), Postives = 138/195 (70.77%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            ARA A  T+ TF++++G +LVQ +IG+G+K+VR+ F +A+E +P IIF+DEID+IG+ R +  +  GD EVQRTMLELLNQLDGF S   IK+I ATNR DILDPAL+R GR+DRKIE P+P+E AR  IL+IHSR+M +   +N  ++A      +GA++KA C EAGM ALR     V  ED    + +V  +
Sbjct:  207 ARAVAHHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGMFALRERRVHVTQEDLEMAVAKVMKR 401          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 3.096e-51
Identity = 105/204 (51.47%), Postives = 136/204 (66.67%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 608
            ARA A +T+A F+ + G +LVQ ++G+GA++VR+ F++A+ K  C+IF DEIDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  I +IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  226 ARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.043e-51
Identity = 98/191 (51.31%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 578
            ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E+R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  218 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 408          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.043e-51
Identity = 98/191 (51.31%), Postives = 134/191 (70.16%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 578
            ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E+R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  219 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 409          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.280e-51
Identity = 98/191 (51.31%), Postives = 133/191 (69.63%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 578
            ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  219 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 409          
BLAST of CN185593 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.280e-51
Identity = 98/191 (51.31%), Postives = 133/191 (69.63%), Query Frame = 3
Query:    6 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 578
            ARA A +T+A F+++ G +LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  219 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 409          
The following BLAST results are available for this feature:
BLAST of CN185593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS7_BOVIN1.390e-5151.4726S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS10_BOVIN1.390e-5150.5126S protease regulatory subunit S10B OS=Bos taurus... [more]
PSMR_METPE2.370e-5154.26Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_METHJ2.370e-5154.35Proteasome-activating nucleotidase OS=Methanospiri... [more]
PRS8_NAEFO3.096e-5152.3126S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS7_RAT3.096e-5151.4726S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_PRUPE4.043e-5151.3126S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7A_ARATH4.043e-5151.3126S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS7_SPIOL5.280e-5151.3126S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_ORYSJ5.280e-5151.3126S protease regulatory subunit 7 OS=Oryza sativa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185593 ID=CN185593; Name=CN185593; organism=Citrus sinensis; type=EST; length=736bp
GAGGGGCTCGTGCTTGTGCAGCACAAACAAATGCTACCTTTTTGAAGCTC
GCAGGCCCTCAACTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAATTAATATATTTTGGGTTGAATATTAAAAAATGGGTATTAA
ACATTGTCTTTGTACTGTACATAATATGTTATAATA
back to top