CN185592

Overview
NameCN185592
Unique NameCN185592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.152e-48
Identity = 98/204 (48.04%), Postives = 139/204 (68.14%), Query Frame = -2
Query:  142 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA--KKKASLNYY 747
            ARA A +T+ATF+++ G +LVQ ++G+GA++VR+ F++A+ K  CIIF DEIDA+G  RFD    GD EVQRTMLEL+ QLDGF     IKV+ ATNR + LDPAL+R GR+DRK+E   P  E RA I +IHS+ M+V   + +E ++R   +  GA+L++VC EAGM A+R        +DF + + +V +  KK +S + Y
Sbjct:  260 ARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRY 463          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.566e-48
Identity = 96/202 (47.52%), Postives = 132/202 (65.35%), Query Frame = -2
Query:  142 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 747
            A+A A  T A F+++ G + VQ ++G+G ++VRD F+LAKE +P IIFIDEIDAI TKRFD++   DREVQR +LELLNQ+DGF  +  +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ E+     D  +GA + ++C E+GMLA+R +   V  +DF +    V  K +    +Y
Sbjct:  216 AKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFY 417          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.566e-48
Identity = 96/202 (47.52%), Postives = 132/202 (65.35%), Query Frame = -2
Query:  142 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 747
            A+A A  T A F+++ G + VQ ++G+G ++VRD F+LAKE +P IIFIDEIDAI TKRFD++   DREVQR +LELLNQ+DGF  +  +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ E+     D  +GA + ++C E+GMLA+R +   V  +DF +    V  K +    +Y
Sbjct:  216 AKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFY 417          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.566e-48
Identity = 96/202 (47.52%), Postives = 132/202 (65.35%), Query Frame = -2
Query:  142 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 747
            A+A A  T A F+++ G + VQ ++G+G ++VRD F+LAKE +P IIFIDEIDAI TKRFD++   DREVQR +LELLNQ+DGF  +  +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ E+     D  +GA + ++C E+GMLA+R +   V  +DF +    V  K +    +Y
Sbjct:  216 AKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFY 417          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.566e-48
Identity = 96/202 (47.52%), Postives = 132/202 (65.35%), Query Frame = -2
Query:  142 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 747
            A+A A  T A F+++ G + VQ ++G+G ++VRD F+LAKE +P IIFIDEIDAI TKRFD++   DREVQR +LELLNQ+DGF  +  +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ E+     D  +GA + ++C E+GMLA+R +   V  +DF +    V  K +    +Y
Sbjct:  216 AKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFY 417          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.751e-48
Identity = 96/202 (47.52%), Postives = 130/202 (64.36%), Query Frame = -2
Query:  142 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 747
            A+A A  T A F+++ G + VQ ++G+G ++VRD F+LAKE +P IIFIDEIDAI TKRFD++   DREVQR +LELLNQ+DGF  +  +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ E+     D  +GA + ++C   GMLA+R  A  V  +DF +    V  K +    +Y
Sbjct:  216 AKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQARGMLAVRETAYIVLAKDFEKAYKTVIKKDEQEHEFY 417          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.751e-48
Identity = 92/202 (45.54%), Postives = 131/202 (64.85%), Query Frame = -2
Query:  142 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 747
            A+A A  T A F+++ G + VQ ++G+G ++VRD F+LAKE +P IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  + Q+ + KM +  +V+ E+     D  + A++ A+C EAGM A+R++   +  +DF +G      K      +Y
Sbjct:  206 AKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFEFY 407          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.274e-47
Identity = 92/202 (45.54%), Postives = 131/202 (64.85%), Query Frame = -2
Query:  142 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 747
            A+A A  T A F+++ G + VQ ++G+G ++VRD F+LAKE +P IIFIDE+DAI T RFD++   DREVQR ++ELLNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  + Q+ + KM +  +V+ E+     D  + A++ A+C EAGM A+R++   +  +DF +G      K      +Y
Sbjct:  211 AKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 412          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.274e-47
Identity = 95/202 (47.03%), Postives = 128/202 (63.37%), Query Frame = -2
Query:  142 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 747
            A+A AA T A+F+++ G + VQ ++G+G ++VRD F+LAKE SP IIFIDEIDAI TKRFD++   DREVQR +LELLNQ+DGF     +KVI ATNR D LDPAL+R GRLDRKIE P P    +  +      +M +  DV+ E+     D  +GA + ++C EAGM A+R +   V  +D  +    V  K      +Y
Sbjct:  212 AKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVKKDTNDFEFY 413          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.255e-47
Identity = 91/201 (45.27%), Postives = 130/201 (64.68%), Query Frame = -2
Query:  142 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 744
            +A A  T ATF+++ G + VQ ++G+G ++VRD F+LA+EK+P I+FIDE+D+I TKRFD+  S DREVQR ++ELLNQ+DGF     +KVI ATNRAD +DPAL+R GRLDRKIE P P    +  +    + KM+++  V+ E L    +  + A + ++C EAGMLA+R     V   DF E   +V  +      +Y
Sbjct:  186 KAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDASTSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRDFEEAYSKVVERSGTQPAFY 386          
The following BLAST results are available for this feature:
BLAST of CN185592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS7_YEAST1.152e-4848.0426S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS6B_RAT2.566e-4847.5226S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA2.566e-4847.5226S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN2.566e-4847.5226S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN2.566e-4847.5226S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_MOUSE9.751e-4847.5226S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS6B_ARATH9.751e-4845.5426S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS6B_SOLTU1.274e-4745.5426S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS6B_CAEEL1.274e-4747.03Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6B_ENCCU8.255e-4745.2726S protease regulatory subunit 6B homolog OS=Ence... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185592 ID=CN185592; Name=CN185592; organism=Citrus sinensis; type=EST; length=751bp
TGGGAGTTTCACTTCTTATTATAACATATTATGTACAGTACAACGATTAT
GTTTAATACCCATTTTTTAATATTCAACCCAAAATATATTAATTACCAAT
TGAAGTAGAGGCTAAAACTTCGCCTTTGGATGTGTCTATGCATAGTAGTT
TAAGCTAGCCTTTTTCTTAGCCTGCACCTGAATGATACCTTCATTGAAAT
CCTCATGGTTGACCTCAGTCGCATCACGGCGAAGAGCAAGCATCCCTGCT
TCAACACAAACAGCTTTTAGTTGTGCCCCATTGAAATCGTCAGTGGATCG
AGCAAGTTCTTCGAAGTTGACATCCGGGTGAACAGTCATCTTCCTCGAAT
GGATTTGCAAAATGCGAGCTCTAGCTTCCTCACTCGGATGTGGTAACTCG
ATCTTGCGATCCAAACGGCCAGATCGCATAAGAGCAGGGTCCAGGATATC
AGCACGATTTGTTGCTGCTATGACCTTAATCCGATCATCGCTGCTAAATC
CATCGAGCTGATTGAGCAACTCTAACATAGTTCGCTGCACCTCCCTGTCT
CCACTCACTTCACTGTCAAACCGCTTTGTACCAATTGCGTCAATTTCGTC
GATGAAAATAATGCAGGGGGACTTCTCCTTTGCAAGTTGAAAGGCATCAC
GAACTAGTTTGGCTCCATCTCCAATGAACATCTGGACTAGTTGAGGGCCT
GCGAGCTTCAAAAAGGTAGCATTTGTTTGTGCTGCACAAGCACGAGCCCC
T
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