CN185592

Overview
NameCN185592
Unique NameCN185592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:698..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.031e-49
Identity = 98/191 (51.31%), Postives = 131/191 (68.59%), Query Frame = -2
Query:  175 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 747
            ARA A +T A F+++ G +LVQ +IG+GA++VR+ FQ+A+ K  CI+F DEIDAIG  RFD  V  D EVQRTMLE+L QLDGF +   IKV+ ATNR DILDPAL+R GRLDRK+E   P  E R +I +IH+R M+   D+ FE LA    +  GA +++VC+EAGM A+      V  +DF + + +V
Sbjct:  256 ARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKV 446          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.959e-49
Identity = 93/195 (47.69%), Postives = 136/195 (69.74%), Query Frame = -2
Query:  163 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 747
            A+A A ++NA F+ +   +  Q F+G+GA++VR+ F++AK K+P IIFIDEIDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D  + I ++  K+
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKR 379          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.959e-49
Identity = 93/195 (47.69%), Postives = 136/195 (69.74%), Query Frame = -2
Query:  163 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 747
            A+A A ++NA F+ +   +  Q F+G+GA++VR+ F++AK K+P IIFIDEIDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D  + I ++  K+
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKR 379          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.959e-49
Identity = 93/195 (47.69%), Postives = 136/195 (69.74%), Query Frame = -2
Query:  163 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 747
            A+A A ++NA F+ +   +  Q F+G+GA++VR+ F++AK K+P IIFIDEIDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D  + I ++  K+
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKR 379          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.959e-49
Identity = 93/195 (47.69%), Postives = 136/195 (69.74%), Query Frame = -2
Query:  163 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 747
            A+A A ++NA F+ +   +  Q F+G+GA++VR+ F++AK K+P IIFIDEIDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D  + I ++  K+
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKR 379          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.959e-49
Identity = 93/195 (47.69%), Postives = 136/195 (69.74%), Query Frame = -2
Query:  163 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 747
            A+A A ++NA F+ +   +  Q F+G+GA++VR+ F++AK K+P IIFIDEIDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D  + I ++  K+
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKR 379          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.959e-49
Identity = 100/204 (49.02%), Postives = 139/204 (68.14%), Query Frame = -2
Query:  145 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAL---RRDATEVNHEDFNEGIIQVQAKKKASLNY 747
            ARA A +T+ATF+++ G +LVQ ++G+GA++VR+ F++A+ K  CIIF DEIDAIG  RFD    GD EVQRTMLEL+ QLDGF     IKV+ ATNR + LD ALMR GR+DRK+E   P  E RA IL+IH++ M +  D+ +E +AR      GA+L++VC EAGM A+   RR ATE +  D  + +++   K  ++ +Y
Sbjct:  230 ARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKVVKGNQKFSSTADY 433          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.170e-49
Identity = 99/202 (49.01%), Postives = 130/202 (64.36%), Query Frame = -2
Query:  142 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 747
            A A A  T A F+++ G + VQ ++G+G ++VRD F+LAKE SP IIFIDEIDAI TKRFD++   DREVQR +LELLNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ EE     D  +GA + A+C EAGM A+R +   V  +DF +G      K ++   +Y
Sbjct:  213 ANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKDFEKGYKNNIKKDESEYEFY 414          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.753e-49
Identity = 98/191 (51.31%), Postives = 137/191 (71.73%), Query Frame = -2
Query:  175 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 747
            A+A A + NATF+++ G +LV+ FIG+GA+LV + F+LAKEK+P IIFIDEIDAIG KR D    G+REV RT+++LL ++DGF     +K+IAATNR DILDPAL+R GR DR IE+P P+ ++R  IL+IH+++M +   V+   +A  T+  +GA LKA+ +EAGM A+R     V  EDF + I +V
Sbjct:  190 AKALAHEVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPAIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILKIHTKRMNL-KGVDLRIIAEMTEGASGADLKAITMEAGMFAIRDRREYVTQEDFLKAIEKV 379          
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.753e-49
Identity = 93/195 (47.69%), Postives = 135/195 (69.23%), Query Frame = -2
Query:  163 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 747
            A+A A ++NA F+ +   +  Q F+G+GA++VR+ F++AK K+P IIFIDEIDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D    I ++  K+
Sbjct:  185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVNAITKINVKR 379          
The following BLAST results are available for this feature:
BLAST of CN185592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS7B_ARATH3.031e-4951.3126S protease regulatory subunit 7 homolog B OS=Ara... [more]
PSMR_SULIY3.959e-4947.69Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM3.959e-4947.69Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL3.959e-4947.69Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK3.959e-4947.69Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA3.959e-4947.69Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PRS7_SCHPO3.959e-4949.0226S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS6B_MANSE5.170e-4949.0126S protease regulatory subunit 6B OS=Manduca sext... [more]
PSMR_THEON6.753e-4951.31Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_SULIN6.753e-4947.69Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185592 ID=CN185592; Name=CN185592; organism=Citrus sinensis; type=EST; length=751bp
TGGGAGTTTCACTTCTTATTATAACATATTATGTACAGTACAACGATTAT
GTTTAATACCCATTTTTTAATATTCAACCCAAAATATATTAATTACCAAT
TGAAGTAGAGGCTAAAACTTCGCCTTTGGATGTGTCTATGCATAGTAGTT
TAAGCTAGCCTTTTTCTTAGCCTGCACCTGAATGATACCTTCATTGAAAT
CCTCATGGTTGACCTCAGTCGCATCACGGCGAAGAGCAAGCATCCCTGCT
TCAACACAAACAGCTTTTAGTTGTGCCCCATTGAAATCGTCAGTGGATCG
AGCAAGTTCTTCGAAGTTGACATCCGGGTGAACAGTCATCTTCCTCGAAT
GGATTTGCAAAATGCGAGCTCTAGCTTCCTCACTCGGATGTGGTAACTCG
ATCTTGCGATCCAAACGGCCAGATCGCATAAGAGCAGGGTCCAGGATATC
AGCACGATTTGTTGCTGCTATGACCTTAATCCGATCATCGCTGCTAAATC
CATCGAGCTGATTGAGCAACTCTAACATAGTTCGCTGCACCTCCCTGTCT
CCACTCACTTCACTGTCAAACCGCTTTGTACCAATTGCGTCAATTTCGTC
GATGAAAATAATGCAGGGGGACTTCTCCTTTGCAAGTTGAAAGGCATCAC
GAACTAGTTTGGCTCCATCTCCAATGAACATCTGGACTAGTTGAGGGCCT
GCGAGCTTCAAAAAGGTAGCATTTGTTTGTGCTGCACAAGCACGAGCCCC
T
back to top