CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_KLEP7 (30S ribosomal protein S5 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +   T+ H ++ ++  ++V++ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V+A    L  +++P  V  K G++V E
Sbjct:   57 PAAIQKAMEKARRNMINVALNHG-TLQHPVKGTHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLAKAYGSTNPINVVRATIDGLENMKSPDMVAAKRGKSVEE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_AZOSE (30S ribosomal protein S5 OS=Azoarcus sp. (strain EbN1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 37/108 (34.26%), Postives = 61/108 (56.48%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QKA ++  + L  +   +  T+ HAI   +    V + PAP+ TG+ AG  ++ +  + G  +V  K +GS NP+N V+A    L AI TP ++  K G++V E
Sbjct:   65 PVAVQKAMDEARRKLKKISL-KNGTLQHAIVGKHGAASVLMQPAPSGTGIIAGGPMRAVFEVMGVTDVTCKCLGSANPYNVVRATLNGLLAINTPAEIAAKRGKSVEE 171
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHELP (30S ribosomal protein S5 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  VE     T+ H ++  +  ++VY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P  +  K G  V E
Sbjct:   58 PAAIQKAMEKARRNIVSVEL-VNGTLHHPVKGRHTGSRVYMQPASEGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPAQIAAKRGLNVDE 164
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PROVI (30S ribosomal protein S5 OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 2 
Query:   77 TIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKY 334
            TI H I   Y   KV + PA   TG+ AG  V+ +L +AG ++V +K +GS NPHN VKA  K L +I    DV E+  +++ E +
Sbjct:   85 TIPHQIIAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGVRDVLTKSLGSSNPHNVVKAAIKGLKSISDANDVAERRSKSLTEVF 170
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_NEIMF (30S ribosomal protein S5 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P+A+QKA ++  +++  V   +  TI H +   +  TKV++ PA   +G+KAG  ++ +    G  N+ +KV GS NP+N V+A    L+ + TP D+  K G TV
Sbjct:   59 PVAVQKAMDQARRSMIKVPL-KNGTIHHEVIGRHGATKVFMQPAKEGSGVKAGGPMRLVFDAMGIHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRGLTV 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_NEIMB (30S ribosomal protein S5 OS=Neisseria meningitidis serogroup B GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P+A+QKA ++  +++  V   +  TI H +   +  TKV++ PA   +G+KAG  ++ +    G  N+ +KV GS NP+N V+A    L+ + TP D+  K G TV
Sbjct:   59 PVAVQKAMDQARRSMIKVPL-KNGTIHHEVIGRHGATKVFMQPAKEGSGVKAGGPMRLVFDAMGIHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRGLTV 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_NEIMA (30S ribosomal protein S5 OS=Neisseria meningitidis serogroup A GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P+A+QKA ++  +++  V   +  TI H +   +  TKV++ PA   +G+KAG  ++ +    G  N+ +KV GS NP+N V+A    L+ + TP D+  K G TV
Sbjct:   59 PVAVQKAMDQARRSMIKVPL-KNGTIHHEVIGRHGATKVFMQPAKEGSGVKAGGPMRLVFDAMGIHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRGLTV 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_NEIM0 (30S ribosomal protein S5 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P+A+QKA ++  +++  V   +  TI H +   +  TKV++ PA   +G+KAG  ++ +    G  N+ +KV GS NP+N V+A    L+ + TP D+  K G TV
Sbjct:   59 PVAVQKAMDQARRSMIKVPL-KNGTIHHEVIGRHGATKVFMQPAKEGSGVKAGGPMRLVFDAMGIHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRGLTV 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_NEIG1 (30S ribosomal protein S5 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P+A+QKA ++  +++  V   +  TI H +   +  TKV++ PA   +G+KAG  ++ +    G  N+ +KV GS NP+N V+A    L+ + TP D+  K G TV
Sbjct:   59 PVAVQKAMDQARRSMIKVPL-KNGTIHHEVIGRHGATKVFMQPAKEGSGVKAGGPMRLVFDAMGIHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRGLTV 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_GEOLS (30S ribosomal protein S5 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFG 313
            P A++K  E+  +NL  V  ++  +I + I   +   ++ + PA   TG+ AG   + I   AG  N+ SK +GS NPHN VKA F+ L  ++TP+++  + G
Sbjct:   57 PEAIRKGVEQAKKNLIKVPVNQNQSIPYEIIGRFGAGRILMKPASPGTGVIAGGAARAIFEAAGISNILSKCLGSNNPHNVVKAAFEGLRLLKTPEELTARRG 159
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_KLEP77.194e-1235.1930S ribosomal protein S5 OS=Klebsiella pneumoniae ... [more]
RS5_AZOSE7.194e-1234.2630S ribosomal protein S5 OS=Azoarcus sp. (strain E... [more]
RS5_SHELP9.395e-1237.9630S ribosomal protein S5 OS=Shewanella loihica (st... [more]
RS5_PROVI9.395e-1240.7030S ribosomal protein S5 OS=Prosthecochloris vibri... [more]
RS5_NEIMF9.395e-1234.9130S ribosomal protein S5 OS=Neisseria meningitidis... [more]
RS5_NEIMB9.395e-1234.9130S ribosomal protein S5 OS=Neisseria meningitidis... [more]
RS5_NEIMA9.395e-1234.9130S ribosomal protein S5 OS=Neisseria meningitidis... [more]
RS5_NEIM09.395e-1234.9130S ribosomal protein S5 OS=Neisseria meningitidis... [more]
RS5_NEIG19.395e-1234.9130S ribosomal protein S5 OS=Neisseria gonorrhoeae ... [more]
RS5_GEOLS9.395e-1233.9830S ribosomal protein S5 OS=Geobacter lovleyi (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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