CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_RHOP2 (30S ribosomal protein S5 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDV 298
            P A++KA E   +NL  V   E  T+ H I   +   +VYL  AP  TG+ AG  ++ +    G ++V +K +GS NP+N V+A F AL  +++P+ V
Sbjct:   69 PEAIRKATEAAKRNLTRVALREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIAGGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHVDSPRSV 166          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEHT (30S ribosomal protein S5 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V+ +  +T+ H ++  +  ++V++ PA   TG+ AG  ++ +L + G +NV SK  GS NP N V+A   AL  + +P+ +  K G  + E
Sbjct:   59 PAAIQKAMEKARRNMINVDLNG-NTLQHPVKGRHAGSQVFMKPASEGTGIIAGGAMRAVLEVTGVQNVLSKCYGSTNPINVVRATISALENMNSPQSIAAKRGLRIDE 165          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_ENTS8 (30S ribosomal protein S5 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +   T+ H ++ ++  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A    L  +++P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRNMINVALNHG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLANMKSPEMVAAKRGKSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_CHLPN (30S ribosomal protein S5 OS=Chlamydia pneumoniae GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 2
Query:   11 ALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDV 298
            A++K  E   +NL  +E  E+ +I H +   +   ++ L PA   TG+ AG  ++ IL +AG K++ +K  GS NP N VKA FKAL  +   KD+
Sbjct:   61 AIRKGGEAAKKNLMKIEALEDGSIPHEVLVHHDGAQLLLKPAKPGTGIVAGSRIRLILEMAGIKDIVAKSFGSNNPMNQVKAAFKALTGLSPRKDL 156          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_ACIAC (30S ribosomal protein S5 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QKA E+C +NL  V   +  +I H+++  +    V L PAP  TG+ AG  ++ +  + G  ++ +K  GS NP+N V+A F AL    TP +V  K G++V
Sbjct:   63 PAAVQKAMEECRRNLVKVSL-KNGSIHHSVKGHHGAASVELHPAPKGTGIIAGGPMRAVFEVVGITDIVAKSHGSSNPYNMVRATFDALVNSTTPAEVAAKRGKSV 167          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_YERE8 (30S ribosomal protein S5 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  + +  V   +  T+ H ++ ++  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A   AL  +++P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRAMINVAL-DNGTLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRGKSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_RHOPT (30S ribosomal protein S5 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDV 298
            P A++KA E   +NL  V   E  T+ H I   +   +VYL  AP  TG+ AG  ++ +    G  +V +K VGS NP+N V+A F AL  +++P+ V
Sbjct:   69 PEAIRKATESAKRNLTRVALREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIAGGPMRAVFETLGIADVVAKSVGSSNPYNMVRATFDALKHLDSPRSV 166          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_RHOPA (30S ribosomal protein S5 OS=Rhodopseudomonas palustris GN=rpsE PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDV 298
            P A++KA E   +NL  V   E  T+ H I   +   +VYL  AP  TG+ AG  ++ +    G  +V +K VGS NP+N V+A F AL  +++P+ V
Sbjct:   69 PEAIRKATESAKRNLTRVALREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIAGGPMRAVFETLGIADVVAKSVGSSNPYNMVRATFDALKHLDSPRSV 166          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_FRATW (30S ribosomal protein S5 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V  + + T+ + + +++  +KV++ PA   TG+ AG  ++++    G  NV +K  GS NP N V+A    L  I++P ++ EK G +V E
Sbjct:   57 PAAIQKAMENAKKNMVSVNLNND-TLWYPVMSNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGLSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_FRATT (30S ribosomal protein S5 OS=Francisella tularensis subsp. tularensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V  + + T+ + + +++  +KV++ PA   TG+ AG  ++++    G  NV +K  GS NP N V+A    L  I++P ++ EK G +V E
Sbjct:   57 PAAIQKAMENAKKNMVSVNLNND-TLWYPVMSNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGLSVEE 163          
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_RHOP21.603e-1136.7330S ribosomal protein S5 OS=Rhodopseudomonas palus... [more]
RS5_PSEHT1.603e-1134.2630S ribosomal protein S5 OS=Pseudoalteromonas halo... [more]
RS5_ENTS81.603e-1135.1930S ribosomal protein S5 OS=Enterobacter sakazakii... [more]
RS5_CHLPN1.603e-1137.5030S ribosomal protein S5 OS=Chlamydia pneumoniae G... [more]
RS5_ACIAC1.603e-1136.7930S ribosomal protein S5 OS=Acidovorax avenae subs... [more]
RS5_YERE82.093e-1135.1930S ribosomal protein S5 OS=Yersinia enterocolitic... [more]
RS5_RHOPT2.093e-1137.7630S ribosomal protein S5 OS=Rhodopseudomonas palus... [more]
RS5_RHOPA2.093e-1137.7630S ribosomal protein S5 OS=Rhodopseudomonas palus... [more]
RS5_FRATW2.093e-1133.3330S ribosomal protein S5 OS=Francisella tularensis... [more]
RS5_FRATT2.093e-1133.3330S ribosomal protein S5 OS=Francisella tularensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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