CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_FRATO (30S ribosomal protein S5 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V  + + T+ + + +++  +KV++ PA   TG+ AG  ++++    G  NV +K  GS NP N V+A    L  I++P ++ EK G +V E
Sbjct:   57 PAAIQKAMENAKKNMVSVNLNND-TLWYPVMSNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGLSVEE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_FRATN (30S ribosomal protein S5 OS=Francisella tularensis subsp. novicida (strain U112) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V  + + T+ + + +++  +KV++ PA   TG+ AG  ++++    G  NV +K  GS NP N V+A    L  I++P ++ EK G +V E
Sbjct:   57 PAAIQKAMENAKKNMVSVNLNND-TLWYPVMSNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGLSVEE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_FRATF (30S ribosomal protein S5 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V  + + T+ + + +++  +KV++ PA   TG+ AG  ++++    G  NV +K  GS NP N V+A    L  I++P ++ EK G +V E
Sbjct:   57 PAAIQKAMENAKKNMVSVNLNND-TLWYPVMSNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGLSVEE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_FRAT1 (30S ribosomal protein S5 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V  + + T+ + + +++  +KV++ PA   TG+ AG  ++++    G  NV +K  GS NP N V+A    L  I++P ++ EK G +V E
Sbjct:   57 PAAIQKAMENAKKNMVSVNLNND-TLWYPVMSNHGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGLSVEE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_CHLSY (30S ribosomal protein S5 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A++K  E   +NL  V      T+ H + T +  TKV L PA   TG+ AGR V+ ++  AG K++ SKV GS NP N VKA FKAL+ + +  ++  +   T  E
Sbjct:   59 PDAIRKGAEAAKRNLIRVPLVHA-TVPHEVVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVYGSNNPVNVVKATFKALSEMTSLHEMASRRDMTPQE 165
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_CHLAA (30S ribosomal protein S5 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A++K  E   +NL  V      T+ H + T +  TKV L PA   TG+ AGR V+ ++  AG K++ SKV GS NP N VKA FKAL+ + +  ++  +   T  E
Sbjct:   59 PDAIRKGAEAAKRNLIRVPLVHA-TVPHEVVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVYGSNNPVNVVKATFKALSEMTSLHEMASRRDMTPQE 165
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_YERPS (30S ribosomal protein S5 OS=Yersinia pseudotuberculosis GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  + +  V  +   T+ H ++ ++  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A   AL  +++P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRGKSVEE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_YERPP (30S ribosomal protein S5 OS=Yersinia pestis (strain Pestoides F) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  + +  V  +   T+ H ++ ++  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A   AL  +++P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRGKSVEE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_YERPN (30S ribosomal protein S5 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  + +  V  +   T+ H ++ ++  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A   AL  +++P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRGKSVEE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_YERPE (30S ribosomal protein S5 OS=Yersinia pestis GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  + +  V  +   T+ H ++ ++  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A   AL  +++P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRGKSVEE 163
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_FRATO2.093e-1133.3330S ribosomal protein S5 OS=Francisella tularensis... [more]
RS5_FRATN2.093e-1133.3330S ribosomal protein S5 OS=Francisella tularensis... [more]
RS5_FRATF2.093e-1133.3330S ribosomal protein S5 OS=Francisella tularensis... [more]
RS5_FRAT12.093e-1133.3330S ribosomal protein S5 OS=Francisella tularensis... [more]
RS5_CHLSY2.093e-1138.8930S ribosomal protein S5 OS=Chloroflexus aurantiac... [more]
RS5_CHLAA2.093e-1138.8930S ribosomal protein S5 OS=Chloroflexus aurantiac... [more]
RS5_YERPS2.734e-1135.1930S ribosomal protein S5 OS=Yersinia pseudotubercu... [more]
RS5_YERPP2.734e-1135.1930S ribosomal protein S5 OS=Yersinia pestis (strai... [more]
RS5_YERPN2.734e-1135.1930S ribosomal protein S5 OS=Yersinia pestis bv. An... [more]
RS5_YERPE2.734e-1135.1930S ribosomal protein S5 OS=Yersinia pestis GN=rps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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