CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_YERPA (30S ribosomal protein S5 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  + +  V  +   T+ H ++ ++  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A   AL  +++P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRGKSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_YERP3 (30S ribosomal protein S5 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  + +  V  +   T+ H ++ ++  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A   AL  +++P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRGKSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_XYLFT (30S ribosomal protein S5 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 35/106 (33.02%), Postives = 60/106 (56.60%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P+A+QK+ E   + +  V  +   T+ H ++ ++    V++ PA   TG+ AG  ++ +L   G KNV +K +GSRNP N V+A  K L  +++P  +  K G+ V
Sbjct:   68 PVAIQKSMEYARKRMSNVSLNNG-TLWHPVKANHGAASVFMKPASEGTGVIAGGAMRAVLEAVGVKNVLAKAIGSRNPINLVRATLKGLEDMQSPTHIALKRGKNV 172          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_XYLF2 (30S ribosomal protein S5 OS=Xylella fastidiosa (strain M23) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 35/106 (33.02%), Postives = 60/106 (56.60%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P+A+QK+ E   + +  V  +   T+ H ++ ++    V++ PA   TG+ AG  ++ +L   G KNV +K +GSRNP N V+A  K L  +++P  +  K G+ V
Sbjct:   68 PVAIQKSMEYARKRMSNVSLNNG-TLWHPVKANHGAASVFMKPASEGTGVIAGGAMRAVLEAVGVKNVLAKAIGSRNPINLVRATLKGLEDMQSPTHIALKRGKNV 172          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_WIGBR (30S ribosomal protein S5 OS=Wigglesworthia glossinidia brevipalpis GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P+A+QKA +K  +N+  +    + T+ H I   +  ++V++ PA   TG+ AG  ++ +L +AG  NV +KV GS NP N V+A   AL  +  P  + EK G+++
Sbjct:   57 PLAIQKAMDKARKNMIIIPIVCK-TLQHEINGYHTGSRVFMKPASEGTGIIAGGAMRAVLEVAGVHNVLAKVYGSTNPINVVRATVNALKKMRFPMHIAEKRGKSI 161          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHISS (30S ribosomal protein S5 OS=Shigella sonnei (strain Ss046) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +   T+ H ++  +  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A    L  + +P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHIFL (30S ribosomal protein S5 OS=Shigella flexneri GN=rpsE PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +   T+ H ++  +  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A    L  + +P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHIF8 (30S ribosomal protein S5 OS=Shigella flexneri serotype 5b (strain 8401) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +   T+ H ++  +  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A    L  + +P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHIBS (30S ribosomal protein S5 OS=Shigella boydii serotype 4 (strain Sb227) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +   T+ H ++  +  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A    L  + +P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SERP5 (30S ribosomal protein S5 OS=Serratia proteamaculans (strain 568) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  + +  V  +   T+ H ++ ++  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A   AL  +++P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRAMINVALNSG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRGKSVEE 163          
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_YERPA2.734e-1135.1930S ribosomal protein S5 OS=Yersinia pestis bv. An... [more]
RS5_YERP32.734e-1135.1930S ribosomal protein S5 OS=Yersinia pseudotubercu... [more]
RS5_XYLFT2.734e-1133.0230S ribosomal protein S5 OS=Xylella fastidiosa (st... [more]
RS5_XYLF22.734e-1133.0230S ribosomal protein S5 OS=Xylella fastidiosa (st... [more]
RS5_WIGBR2.734e-1134.9130S ribosomal protein S5 OS=Wigglesworthia glossin... [more]
RS5_SHISS2.734e-1135.1930S ribosomal protein S5 OS=Shigella sonnei (strai... [more]
RS5_SHIFL2.734e-1135.1930S ribosomal protein S5 OS=Shigella flexneri GN=r... [more]
RS5_SHIF82.734e-1135.1930S ribosomal protein S5 OS=Shigella flexneri sero... [more]
RS5_SHIBS2.734e-1135.1930S ribosomal protein S5 OS=Shigella boydii seroty... [more]
RS5_SERP52.734e-1135.1930S ribosomal protein S5 OS=Serratia proteamaculan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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