CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5247 contig Csv1_Contig5247:144..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_LEGPC (30S ribosomal protein S5 OS=Legionella pneumophila (strain Corby) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            PIA+QKA ++  +N+ Y+      TI H I  +Y  +KV++ PA   TG+ AG  ++ +L + G +N+ +K +GS NP N V+A   AL  I TP  V  K G+TV E
Sbjct:   58 PIAIQKAMDQAKKNMVYIPLSGT-TIFHEITWNYGASKVFMKPASEGTGIIAGGAMRAVLEVLGVQNILAKSIGSTNPSNIVRATIGALTHIGTPDYVAAKRGKTVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_LEGPA (30S ribosomal protein S5 OS=Legionella pneumophila (strain Paris) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            PIA+QKA ++  +N+ Y+      TI H I  +Y  +KV++ PA   TG+ AG  ++ +L + G +N+ +K +GS NP N V+A   AL  I TP  V  K G+TV E
Sbjct:   58 PIAIQKAMDQAKKNMVYIPLSGT-TIFHEITWNYGASKVFMKPASEGTGIIAGGAMRAVLEVLGVQNILAKSIGSTNPSNIVRATIGALTHIGTPDYVAAKRGKTVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_IDILO (30S ribosomal protein S5 OS=Idiomarina loihiensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V+   + T+ H ++  +  ++VY+ PA   TG+ AG  ++ +L ++G  NV SK  GS NP N V+A  KALN +++P+ V  K G  V E
Sbjct:   57 PAAIQKAMEKARRNMVTVQLKGD-TLQHPVKGRHSGSQVYMQPASEGTGIIAGGAMRAVLEVSGVHNVLSKAYGSTNPINVVRATIKALNGMKSPEQVAAKRGLRVDE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEU5 (30S ribosomal protein S5 OS=Pseudomonas stutzeri (strain A1501) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 41/108 (37.96%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ +A + ++  +K+Y+ PA   TG+ AG  ++ IL +AG  NV +K  GS NP N V A FK L A+++P+ +  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNGT-TLQYATKAAHGASKIYMQPASEGTGVIAGGAMRAILEVAGVHNVLAKCYGSTNPVNVVHATFKGLKAMQSPESIAAKRGKSVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEPW (30S ribosomal protein S5 OS=Pseudomonas putida (strain W619) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+  +  T+ +A + ++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L A+++P+ +  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKAMQSPESIAAKRGKSVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEPK (30S ribosomal protein S5 OS=Pseudomonas putida (strain KT2440) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+  +  T+ +A + ++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L A+++P+ +  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKAMQSPESIAAKRGKSVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEPG (30S ribosomal protein S5 OS=Pseudomonas putida (strain GB-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+  +  T+ +A + ++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L A+++P+ +  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKAMQSPESIAAKRGKSVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEP1 (30S ribosomal protein S5 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+  +  T+ +A + ++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L A+++P+ +  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKAMQSPESIAAKRGKSVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEMY (30S ribosomal protein S5 OS=Pseudomonas mendocina (strain ymp) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ + I++++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L  +++P+ V  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNGT-TLQYPIKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKTMQSPESVAAKRGKSVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_ALCBS (30S ribosomal protein S5 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  VE +   TI H ++  +  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V+A F  L ++ +P+ V  K G++V E
Sbjct:   58 PAAIQKALEAARRNMIQVELNGT-TIQHPMKARHGASKVYMQPADEGTGVIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVRATFNGLKSMASPESVAAKRGKSVDE 164          
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_LEGPC5.885e-1439.8130S ribosomal protein S5 OS=Legionella pneumophila... [more]
RS5_LEGPA5.885e-1439.8130S ribosomal protein S5 OS=Legionella pneumophila... [more]
RS5_IDILO5.885e-1438.8930S ribosomal protein S5 OS=Idiomarina loihiensis ... [more]
RS5_PSEU57.686e-1437.9630S ribosomal protein S5 OS=Pseudomonas stutzeri (... [more]
RS5_PSEPW7.686e-1437.9630S ribosomal protein S5 OS=Pseudomonas putida (st... [more]
RS5_PSEPK7.686e-1437.9630S ribosomal protein S5 OS=Pseudomonas putida (st... [more]
RS5_PSEPG7.686e-1437.9630S ribosomal protein S5 OS=Pseudomonas putida (st... [more]
RS5_PSEP17.686e-1437.9630S ribosomal protein S5 OS=Pseudomonas putida (st... [more]
RS5_PSEMY7.686e-1437.9630S ribosomal protein S5 OS=Pseudomonas mendocina ... [more]
RS5_ALCBS7.686e-1438.8930S ribosomal protein S5 OS=Alcanivorax borkumensi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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