CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5247 contig Csv1_Contig5247:144..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_VIBVU (30S ribosomal protein S5 OS=Vibrio vulnificus GN=rpsE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QKA EK  +N+  +  +E  T+ H ++  +  +KVY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P+ V  K G TV
Sbjct:   58 PAAIQKAMEKARRNMVTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALVDVKSPEMVAAKRGLTV 162          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PHOLL (30S ribosomal protein S5 OS=Photorhabdus luminescens subsp. laumondii GN=rpsE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 39/108 (36.11%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +   T+ H ++ ++  ++V++ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V+A   AL+++++P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRNMKTVALNSG-TLYHPVKGAHTGSRVFMQPAHEGTGIIAGGAMRAVLEVAGVRNVLAKTYGSTNPINVVRATLDALDSMKSPEMVAAKRGKSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_MARAV (30S ribosomal protein S5 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rpsE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P+A+QKA E   +N+  V   +  T+ + ++  +  +KV++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V++  K L A++ P+DV  K G++V
Sbjct:   57 PVAIQKAMEAARKNMVDVAL-DGTTLQYPVRAQHGGSKVFMQPASEGTGIIAGGAMRAVLEVAGVQNVLSKCYGSTNPVNVVRSTIKGLQAMKAPEDVAAKRGKSV 161          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_BLOFL (30S ribosomal protein S5 OS=Blochmannia floridanus GN=rpsE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKYLL 340
            P A+QKA EK   N+  +  +   T+ H+I   Y   ++Y+ PA   TG+ AG  ++ IL + G  NV +K  GS NP N V+A   AL  +++P+ V EK G+++  +Y+L
Sbjct:   60 PSAIQKAMEKARHNMIDIPLNPGRTLQHSIIGIYTGARIYMKPASEGTGIIAGGAMRAILEVVGIHNVLAKAYGSTNPINIVRATVNALKNMKSPEMVAEKRGKSL--EYIL 169          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RT05_MOUSE (28S ribosomal protein S5, mitochondrial OS=Mus musculus GN=Mrps5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 2
Query:   11 ALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            A +KA  +    LHY+ER+E HTI H I   +K+T++ +   P   G++  R + TI  L G K++ ++V GS N  N  + LF  L   ET + + +K G  VVE
Sbjct:  269 AFRKAKNRAIHYLHYIERYEGHTIFHDISLRFKRTQIRMKKQPRGYGLRCHRAIITICRLIGIKDMYARVTGSMNMLNLTRGLFHGLARQETHQHLADKKGLHVVE 374          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RT05_BOVIN (28S ribosomal protein S5, mitochondrial OS=Bos taurus GN=MRPS5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 2
Query:   11 ALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            A +KA  +    LHY+ER+E+HTI H I  ++K+T + +   P   G++  R + TI  L G K++ +KV GS N  +  + LF+ L+  ET + + +K    VVE
Sbjct:  267 AFRKAKNRAVHYLHYIERYEDHTIYHDISLTFKRTHIKMKKQPRGYGLRCHRAITTICRLIGIKDMYAKVSGSVNMLSLTRGLFQGLSRQETHQQLADKKSLHVVE 372          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_DICNV (30S ribosomal protein S5 OS=Dichelobacter nodosus (strain VCS1703A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 37/108 (34.26%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QKA ++  +NL  +  +++ T+ HAI   +   +V++ PA   TG+ AG  ++ +  + G K+V +K  G+RNP N ++A   AL ++ TP+ V  K G++V E
Sbjct:   59 PVAIQKAMDQAKKNLVTIALNKD-TLQHAITGHHGAARVFMQPASEGTGIIAGGAMRAVFDVVGVKDVLAKCQGTRNPGNVIRATINALTSMATPEKVAAKRGKSVEE 165          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_AZOVD (30S ribosomal protein S5 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsE PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 39/108 (36.11%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+     T+ + +++++  ++VY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L  +++P+ V  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLSGT-TLQYPVKSAHGASRVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKEMQSPESVAAKRGKSVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_METCA (30S ribosomal protein S5 OS=Methylococcus capsulatus GN=rpsE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QK+ E+  +N+  V  + + T+ H +  +    KV++ PA   TG+ AG  ++ +  + G  NV +K +G+ NP N V+A  K L A+  PK V  K G TV E
Sbjct:   60 PVAIQKSMEQARKNMRKVALNGQ-TLHHPVTAAAGAAKVHMQPASEGTGIIAGGAMRAVFEVVGVHNVLAKCIGTNNPINVVRATIKGLTALRDPKSVAAKRGMTVEE 166          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RT05_PONAB (28S ribosomal protein S5, mitochondrial OS=Pongo abelii GN=MRPS5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 2
Query:   11 ALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            A +KA  +   +L+Y+ER+E+HTI H I   +K+T + +   P   G++  R + TI  L G K++ +KV GS N  +  + LF  L+  ET + + +K G  VVE
Sbjct:  267 AFRKAKNRAVHHLYYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSTNMLSLTQGLFHGLSRQETHQQLADKKGLHVVE 372          
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_VIBVU4.982e-1339.6230S ribosomal protein S5 OS=Vibrio vulnificus GN=r... [more]
RS5_PHOLL4.982e-1336.1130S ribosomal protein S5 OS=Photorhabdus luminesce... [more]
RS5_MARAV4.982e-1336.7930S ribosomal protein S5 OS=Marinobacter aquaeolei... [more]
RS5_BLOFL4.982e-1336.6130S ribosomal protein S5 OS=Blochmannia floridanus... [more]
RT05_MOUSE6.507e-1336.7928S ribosomal protein S5, mitochondrial OS=Mus mus... [more]
RT05_BOVIN6.507e-1335.8528S ribosomal protein S5, mitochondrial OS=Bos tau... [more]
RS5_DICNV6.507e-1334.2630S ribosomal protein S5 OS=Dichelobacter nodosus ... [more]
RS5_AZOVD6.507e-1336.1130S ribosomal protein S5 OS=Azotobacter vinelandii... [more]
RS5_METCA8.498e-1335.1930S ribosomal protein S5 OS=Methylococcus capsulat... [more]
RT05_PONAB1.110e-1235.8528S ribosomal protein S5, mitochondrial OS=Pongo a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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