CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5247 contig Csv1_Contig5247:144..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHESR (30S ribosomal protein S5 OS=Shewanella sp. (strain MR-7) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  VE +   T+ H ++  +  ++VY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P  +  K G  V E
Sbjct:   58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGLNVDE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHESM (30S ribosomal protein S5 OS=Shewanella sp. (strain MR-4) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  VE +   T+ H ++  +  ++VY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P  +  K G  V E
Sbjct:   58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGLNVDE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHESA (30S ribosomal protein S5 OS=Shewanella sp. (strain ANA-3) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  VE +   T+ H ++  +  ++VY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P  +  K G  V E
Sbjct:   58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGLNVDE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHEPC (30S ribosomal protein S5 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  VE +   T+ H ++  +  ++VY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P  +  K G  V E
Sbjct:   58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGLNVDE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHEON (30S ribosomal protein S5 OS=Shewanella oneidensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  VE +   T+ H ++  +  ++VY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P  +  K G  V E
Sbjct:   58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGLNVDE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_COLP3 (30S ribosomal protein S5 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  ++  +  T+ H I   +  +KV++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  + +P+ +  K G+ V E
Sbjct:   60 PAAIQKAMEKAHRNIVTIDL-KGTTLQHVITGKHSGSKVFMKPASEGTGIIAGGAMRAVLEVAGVQNVLSKAYGSTNPINVVRATVSALVNMHSPEGMAAKRGKRVDE 166          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_CHRSD (30S ribosomal protein S5 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 37/108 (34.26%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QKA ++  +N+  V      T+ + ++  +  +KV++ PA   TG+ AG  ++++L LAG  +V +K  GS NP N V+A  K L ++++P+D+  K G +V E
Sbjct:   57 PVAIQKAMDQARRNMVKVSLSGA-TLQYPVKARHGASKVFMQPASEGTGIIAGGAMRSVLELAGVHDVLAKCYGSTNPVNVVRATIKGLASMQSPEDIAAKRGMSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PELPD (30S ribosomal protein S5 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRT 319
            P A++K  E+  +NL  V  ++  TI   I+  +   ++ + PA   TG+ AG   + I   AG  N+ SK +GS NPHN VKA F  L  +++P+++  + G T
Sbjct:   57 PEAIRKGVEQAKKNLIKVPVNQNQTIPFEIEGKFGAGRLLMKPASAGTGVIAGGAARAIFEAAGINNILSKCLGSNNPHNVVKAAFAGLQRLKSPEELAARRGIT 161          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_METFK (30S ribosomal protein S5 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 36/108 (33.33%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QKA ++  +++  V  +   T+ HA+   +   KV++ PA   TG+ AG  ++ I  + G  NV +K +GS NP+N V+A    L ++ TP ++  K G++V E
Sbjct:   60 PVAVQKAMDEARRSMIKVSLNNG-TLYHAVTGVHGAAKVFIQPASEGTGIIAGGAMRAIFEVMGVTNVLAKCIGSTNPYNVVRATLNGLKSMNTPAEIAAKRGKSVEE 166          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_CHLAD (30S ribosomal protein S5 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A++K  E   +NL  V      TI H I T +  TKV L PA   TG+ AGR V+ ++  AG K++ SKV GS NP N VKA FKAL+ + + +++  +   T  E
Sbjct:   59 PDAIRKGAEAAKRNLIRVPLVHS-TIPHEIVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVYGSNNPVNVVKATFKALSEMTSLQEMARRRDMTPQE 165          
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_SHESR4.217e-1237.9630S ribosomal protein S5 OS=Shewanella sp. (strain... [more]
RS5_SHESM4.217e-1237.9630S ribosomal protein S5 OS=Shewanella sp. (strain... [more]
RS5_SHESA4.217e-1237.9630S ribosomal protein S5 OS=Shewanella sp. (strain... [more]
RS5_SHEPC4.217e-1237.9630S ribosomal protein S5 OS=Shewanella putrefacien... [more]
RS5_SHEON4.217e-1237.9630S ribosomal protein S5 OS=Shewanella oneidensis ... [more]
RS5_COLP34.217e-1237.0430S ribosomal protein S5 OS=Colwellia psychrerythr... [more]
RS5_CHRSD4.217e-1234.2630S ribosomal protein S5 OS=Chromohalobacter salex... [more]
RS5_PELPD5.508e-1234.2930S ribosomal protein S5 OS=Pelobacter propionicus... [more]
RS5_METFK5.508e-1233.3330S ribosomal protein S5 OS=Methylobacillus flagel... [more]
RS5_CHLAD5.508e-1240.7430S ribosomal protein S5 OS=Chloroflexus aggregans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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