CN185587
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHESR (30S ribosomal protein S5 OS=Shewanella sp. (strain MR-7) GN=rpsE PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2 Query: 5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328 P A+QKA EK +N+ VE + T+ H ++ + ++VY+ PA TG+ AG ++ +L +AG NV SK GS NP N V+A AL +++P + K G V E Sbjct: 58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGLNVDE 164
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHESM (30S ribosomal protein S5 OS=Shewanella sp. (strain MR-4) GN=rpsE PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2 Query: 5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328 P A+QKA EK +N+ VE + T+ H ++ + ++VY+ PA TG+ AG ++ +L +AG NV SK GS NP N V+A AL +++P + K G V E Sbjct: 58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGLNVDE 164
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHESA (30S ribosomal protein S5 OS=Shewanella sp. (strain ANA-3) GN=rpsE PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2 Query: 5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328 P A+QKA EK +N+ VE + T+ H ++ + ++VY+ PA TG+ AG ++ +L +AG NV SK GS NP N V+A AL +++P + K G V E Sbjct: 58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGLNVDE 164
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHEPC (30S ribosomal protein S5 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rpsE PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2 Query: 5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328 P A+QKA EK +N+ VE + T+ H ++ + ++VY+ PA TG+ AG ++ +L +AG NV SK GS NP N V+A AL +++P + K G V E Sbjct: 58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGLNVDE 164
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHEON (30S ribosomal protein S5 OS=Shewanella oneidensis GN=rpsE PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2 Query: 5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328 P A+QKA EK +N+ VE + T+ H ++ + ++VY+ PA TG+ AG ++ +L +AG NV SK GS NP N V+A AL +++P + K G V E Sbjct: 58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGLNVDE 164
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_COLP3 (30S ribosomal protein S5 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rpsE PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12 Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = 2 Query: 5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328 P A+QKA EK +N+ ++ + T+ H I + +KV++ PA TG+ AG ++ +L +AG +NV SK GS NP N V+A AL + +P+ + K G+ V E Sbjct: 60 PAAIQKAMEKAHRNIVTIDL-KGTTLQHVITGKHSGSKVFMKPASEGTGIIAGGAMRAVLEVAGVQNVLSKAYGSTNPINVVRATVSALVNMHSPEGMAAKRGKRVDE 166
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_CHRSD (30S ribosomal protein S5 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpsE PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12 Identity = 37/108 (34.26%), Postives = 66/108 (61.11%), Query Frame = 2 Query: 5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328 P+A+QKA ++ +N+ V T+ + ++ + +KV++ PA TG+ AG ++++L LAG +V +K GS NP N V+A K L ++++P+D+ K G +V E Sbjct: 57 PVAIQKAMDQARRNMVKVSLSGA-TLQYPVKARHGASKVFMQPASEGTGIIAGGAMRSVLELAGVHDVLAKCYGSTNPVNVVRATIKGLASMQSPEDIAAKRGMSVEE 163
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PELPD (30S ribosomal protein S5 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsE PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12 Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 2 Query: 5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRT 319 P A++K E+ +NL V ++ TI I+ + ++ + PA TG+ AG + I AG N+ SK +GS NPHN VKA F L +++P+++ + G T Sbjct: 57 PEAIRKGVEQAKKNLIKVPVNQNQTIPFEIEGKFGAGRLLMKPASAGTGVIAGGAARAIFEAAGINNILSKCLGSNNPHNVVKAAFAGLQRLKSPEELAARRGIT 161
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_METFK (30S ribosomal protein S5 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsE PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12 Identity = 36/108 (33.33%), Postives = 63/108 (58.33%), Query Frame = 2 Query: 5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328 P+A+QKA ++ +++ V + T+ HA+ + KV++ PA TG+ AG ++ I + G NV +K +GS NP+N V+A L ++ TP ++ K G++V E Sbjct: 60 PVAVQKAMDEARRSMIKVSLNNG-TLYHAVTGVHGAAKVFIQPASEGTGIIAGGAMRAIFEVMGVTNVLAKCIGSTNPYNVVRATLNGLKSMNTPAEIAAKRGKSVEE 166
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_CHLAD (30S ribosomal protein S5 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpsE PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12 Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 2 Query: 5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328 P A++K E +NL V TI H I T + TKV L PA TG+ AGR V+ ++ AG K++ SKV GS NP N VKA FKAL+ + + +++ + T E Sbjct: 59 PDAIRKGAEAAKRNLIRVPLVHS-TIPHEIVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVYGSNNPVNVVKATFKALSEMTSLQEMARRRDMTPQE 165 The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 211
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bpback to top |