CN185583

Overview
NameCN185583
Unique NameCN185583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185583 vs. ExPASy Swiss-Prot
Match: RS27A_YEAST (40S ribosomal protein S27-A OS=Saccharomyces cerevisiae GN=RPS27A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.321e-21
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   65 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 295
            DLL+P A           LVQ P S+F+DVKC GC NITTVFSH+QT V C +C ++LC PTGG+A+L+EG SFRRK
Sbjct:    6 DLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLSEGTSFRRK 82          
BLAST of CN185583 vs. ExPASy Swiss-Prot
Match: RS27_DICDI (40S ribosomal protein S27 OS=Dictyostelium discoideum GN=rps27 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 4.337e-21
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 2
Query:   65 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 301
            DLL P            RLVQ+PNSFFMD+ C GC  ITTVFSH+Q VV+C +C +V+ QPTGGRAR+T GC  R+K D
Sbjct:    7 DLLFPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSSCSTVIAQPTGGRARITAGCRLRQKSD 85          
BLAST of CN185583 vs. ExPASy Swiss-Prot
Match: RS27_ENTHI (40S ribosomal protein S27 OS=Entamoeba histolytica GN=RPS27 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 2
Query:   59 DIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 295
            ++DLLNP A          RLV +PNS+F+++KC  C   TT FSH+   ++C  C   L QPTGG+ +LT+ C FR K
Sbjct:    5 EVDLLNPTAASEAKAHKMKRLVPTPNSYFLEIKCPKCGATTTTFSHAHRQILCQKCGQPLGQPTGGKLKLTQQCKFRIK 83          
The following BLAST results are available for this feature:
BLAST of CN185583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS27A_YEAST3.321e-2158.4440S ribosomal protein S27-A OS=Saccharomyces cerev... [more]
RS27_DICDI4.337e-2156.9640S ribosomal protein S27 OS=Dictyostelium discoid... [more]
RS27_ENTHI1.765e-1444.3040S ribosomal protein S27 OS=Entamoeba histolytica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185583 ID=CN185583; Name=CN185583; organism=Citrus sinensis; type=EST; length=449bp
CCCATGATAGGGTTTTCTAGGTTCTCCTGGAGCATTTGCACCCTCGGTTC
TCCAAAATGATATTGATTTGTTGAATCCTCCGGCTGAGCTTGAGAAGAAG
AAGCACAAGCTTAAGCGTCTTGTTCAGTCACCCAATTCCTTTTTCATGGA
TGTGAAATGTCAGGGTTGCTTCAACATAACAACTGTTTTCAGCCACTCTC
AAACTGTGGTGGTTTGTGGCAACTGCCAGTCCGTTCTATGCCAGCCCACT
GGTGGACGTGCCAGACTCACTGAGGGATGTTCTTTCCGGAGAAAGGGTGA
CTAAGTGCTACTAAATGATGGAAGAATTTTGTCACATCCTTTCTTTTTTC
CCCCTTTTTCCTCTTTTGTTATGATGTATTAATTTTGATATAACTTATGG
TGTGGTTGATCTTATGTTTGAAAGATTATATTTCTAAGTGAATTTTTTG
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