CN185582

Overview
NameCN185582
Unique NameCN185582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_BOVIN (40S ribosomal protein S27 OS=Bos taurus GN=RPS27 PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VL QPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27L_RAT (40S ribosomal protein S27-like protein OS=Rattus norvegicus GN=Rps27l PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VL QPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27L_MOUSE (40S ribosomal protein S27-like protein OS=Mus musculus GN=Rps27l PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VL QPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27L_HUMAN (40S ribosomal protein S27-like protein OS=Homo sapiens GN=RPS27L PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VL QPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27L_BOVIN (40S ribosomal protein S27-like protein OS=Bos taurus GN=RPS27L PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VL QPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSLDEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_NEUCR (40S ribosomal protein S27 OS=Neurospora crassa GN=rps-27 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.219e-23
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = -2
Query:  159 IDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 392
            +DLLNP           K LV +P SFFMDVKC GCF ITTVFSH+QTVV+C  C +VL QPTGG+ARLTEGCSFRRK
Sbjct:    5 VDLLNPSPASEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_PONAB (40S ribosomal protein S27 OS=Pongo abelii GN=RPS27 PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 2.080e-23
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            D L+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VL QPTGG+ARLTEGCSFRRK
Sbjct:    6 DPLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_HOMAM (40S ribosomal protein S27 OS=Homarus americanus GN=RPS27 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 3.003e-22
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P           KRLVQ PNS+FMDVKC GCF I+TVFSH+QTVV C  C +VL QPTGG+A+LT+GCSFR+K
Sbjct:    6 DLLHPSPSEEKRKCKLKRLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCATVLCQPTGGKAKLTDGCSFRKK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_CAEEL (40S ribosomal protein S27 OS=Caenorhabditis elegans GN=rps-27 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 5.123e-22
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = -2
Query:  159 IDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 392
            +DLL+P           KRLVQ PNS+FMDVKC GCF I+TVFSH+ TVVVC  C +VL QPT G+A+LTEGCSFR+K
Sbjct:    5 VDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_DICDI (40S ribosomal protein S27 OS=Dictyostelium discoideum GN=rps27 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 5.664e-21
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = -2
Query:  153 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRKGD 389
            DLL P           KRLVQ+PNSFFMD+ C GC  ITTVFSH+Q VV+C +C +V+ QPTGGRAR+T GC  R+K D
Sbjct:    7 DLLFPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSSCSTVIAQPTGGRARITAGCRLRQKSD 85          
The following BLAST results are available for this feature:
BLAST of CN185582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS27_BOVIN3.209e-2468.8340S ribosomal protein S27 OS=Bos taurus GN=RPS27 P... [more]
RS27L_RAT3.209e-2468.8340S ribosomal protein S27-like protein OS=Rattus n... [more]
RS27L_MOUSE3.209e-2468.8340S ribosomal protein S27-like protein OS=Mus musc... [more]
RS27L_HUMAN3.209e-2468.8340S ribosomal protein S27-like protein OS=Homo sap... [more]
RS27L_BOVIN3.209e-2468.8340S ribosomal protein S27-like protein OS=Bos taur... [more]
RS27_NEUCR1.219e-2366.6740S ribosomal protein S27 OS=Neurospora crassa GN=... [more]
RS27_PONAB2.080e-2367.5340S ribosomal protein S27 OS=Pongo abelii GN=RPS27... [more]
RS27_HOMAM3.003e-2263.6440S ribosomal protein S27 OS=Homarus americanus GN... [more]
RS27_CAEEL5.123e-2262.8240S ribosomal protein S27 OS=Caenorhabditis elegan... [more]
RS27_DICDI5.664e-2158.2340S ribosomal protein S27 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185582 ID=CN185582; Name=CN185582; organism=Citrus sinensis; type=EST; length=450bp
CCCCCGCAAAATTCACTTAGAATATAATCTTTCAAACATAAGATCAACCA
CACCATCCCTTTATATCAAAATTAATACATCATAACAAAAGAGGAAAAAG
GGGGAAAAAAGAAAGGATGTGACAAAATTCTTCCATCATTTAGTAGCACT
TAGTCACCCTTTCTCCGGAAAGAACATCCCTCAGTGAGTCTGGCACGTCC
ACCAGTGGGCTGGCGTAGAACGGACTGGCAGTTGCCACAAACCACCACAG
TTTGAGAGTGGCTGAAAACAGTTGTTATGTTGAAGCAACCCTGACATTTC
ACATCCATGAAAAAGGAATTGGGTGACTGAACAAGACGCTTAAGCTTGTG
CTTCTTCTTCTCAAGCTCAGCCGGAGGATTCAACAAATCAATATCATTTT
GGAGAACCGTGTTTGCAAATGCTCCGGGAGAACCTAGAAAACCCTAGCCT
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